resources

Generate mapping from TopMed raw variables to TopMed harmonized variables

Contents

• map-topmed-raw-to-harmonized/

  • generate_mapping.py -- Script
  • raw-to-harmonized-topmed-vars.csv -- Output

• human-readable-harmonized-variable-documentation/

  • TopMED variable documentation

• merged_TOPMed_harmonized_data_file

External resources

• copies_of_external_source_files
• harmonized-variable-documentation
  • Symbolic link to local clone of UW-GAC/topmed-dcc-harmonized-phenotypes. Clone that repo in the same directory as this repo, and the symlink should work.