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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(CORCES2020_get_ATAC_peak_overlap)
export(CORCES2020_get_hichip_fithichip_overlap)
export(CS_bin_plot)
export(CS_counts_plot)
export(IMPACT_query)
export(MOTIFBREAKR)
export(MOTIFBREAKR_calc_pvals)
export(MOTIFBREAKR_filter)
export(MOTIFBREAKR_plot)
export(MOTIFBREAKR_summarize)
export(NOTT2019_epigenomic_histograms)
export(NOTT2019_get_epigenomic_peaks)
export(NOTT2019_get_interactome)
export(NOTT2019_get_promoter_interactome_data)
export(NOTT2019_get_regulatory_regions)
export(NOTT2019_plac_seq_plot)
export(ROADMAP_construct_reference)
export(ROADMAP_query)
export(XGR_enrichment)
export(XGR_filter_assays)
export(XGR_filter_sources)
export(XGR_query)
export(add_mb)
export(annotate_missense)
export(annotate_snps)
export(annotation_file_name)
export(convert_plots)
export(get_CORCES2020_bulkATACseq_peaks)
export(get_CORCES2020_cicero_coaccessibility)
export(get_CORCES2020_hichip_fithichip_loop_calls)
export(get_CORCES2020_scATACseq_celltype_peaks)
export(get_CORCES2020_scATACseq_peaks)
export(get_NOTT2019_superenhancer_interactome)
export(get_window_limits)
export(granges_overlap)
export(import_ucsc_bigwigs)
export(merge_celltype_specific_epigenomics)
export(peak_overlap_plot)
export(plot_dataset_overlap)
export(plot_missense)
export(super_summary_plot)
export(test_enrichment)
importFrom(BiocGenerics,"%in%")
importFrom(DescTools,Divisors)
importFrom(DescTools,RoundTo)
importFrom(DescTools,StrCap)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,GRangesList)
importFrom(GenomicRanges,elementMetadata)
importFrom(GenomicRanges,end)
importFrom(GenomicRanges,findOverlaps)
importFrom(GenomicRanges,makeGRangesFromDataFrame)
importFrom(GenomicRanges,mcols)
importFrom(GenomicRanges,seqnames)
importFrom(GenomicRanges,split)
importFrom(GenomicRanges,start)
importFrom(IRanges,IRanges)
importFrom(IRanges,subsetByOverlaps)
importFrom(S4Vectors,queryHits)
importFrom(S4Vectors,subjectHits)
importFrom(XGR,xGRviaGenomicAnno)
importFrom(XGR,xRDataLoader)
importFrom(data.table,":=")
importFrom(data.table,.SD)
importFrom(data.table,as.data.table)
importFrom(data.table,data.table)
importFrom(data.table,dcast)
importFrom(data.table,fread)
importFrom(data.table,fwrite)
importFrom(data.table,melt.data.table)
importFrom(data.table,merge.data.table)
importFrom(data.table,rbindlist)
importFrom(data.table,transpose)
importFrom(downloadR,zenodo_upload)
importFrom(dplyr,arrange)
importFrom(dplyr,desc)
importFrom(dplyr,group_by)
importFrom(dplyr,mutate)
importFrom(dplyr,n_distinct)
importFrom(dplyr,rename)
importFrom(dplyr,sample_n)
importFrom(dplyr,select)
importFrom(dplyr,slice)
importFrom(dplyr,slice_head)
importFrom(dplyr,slice_max)
importFrom(dplyr,summarise)
importFrom(dplyr,tally)
importFrom(dplyr,top_n)
importFrom(dplyr,vars)
importFrom(echodata,dt_to_granges)
importFrom(echodata,find_consensus_snps)
importFrom(echodata,get_CS_bins)
importFrom(echodata,get_CS_counts)
importFrom(echodata,get_data)
importFrom(echodata,get_header)
importFrom(echodata,is_ggbio)
importFrom(echodata,is_granges)
importFrom(echodata,snp_group_colorDict)
importFrom(echodata,snp_group_filters)
importFrom(echotabix,construct_query)
importFrom(echotabix,convert)
importFrom(echotabix,liftover)
importFrom(echotabix,query)
importFrom(ggbio,ggbio)
importFrom(ggplot2,xlim)
importFrom(grDevices,dev.off)
importFrom(grDevices,png)
importFrom(methods,is)
importFrom(methods,show)
importFrom(parallel,mclapply)
importFrom(patchwork,plot_annotation)
importFrom(patchwork,plot_layout)
importFrom(patchwork,plot_spacer)
importFrom(patchwork,wrap_plots)
importFrom(rtracklayer,import)
importFrom(rtracklayer,import.bw)
importFrom(stats,as.formula)
importFrom(stats,formula)
importFrom(stats,median)
importFrom(stats,p.adjust)
importFrom(stats,setNames)
importFrom(stringr,str_split)
importFrom(tidyr,separate)
importFrom(tools,R_user_dir)
importFrom(utils,data)
importFrom(utils,zip)