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additional ions for ETD-type fragmentations #16

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lars-kolbowski opened this issue Jul 25, 2017 · 0 comments
Open

additional ions for ETD-type fragmentations #16

lars-kolbowski opened this issue Jul 25, 2017 · 0 comments

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@lars-kolbowski
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lars-kolbowski commented Jul 25, 2017

Additional ions c-1 and z+1 can occur due to hydrogen transfer from c to z ions.
Apparently c+1 and y ions are also possible.

MQ does an iterative search where they use the best score result:
first: only c, z, z+1
second: c, z, z+1 & c-1, c+1
third: c, z, z+1 & y
fourth: c, z, z+1 & c-1, c+1, y

Could be worthwhile to include at least z+1 ions

MaxQuant Summer school presentation slide

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