e85 job causes AttributeError: 'rmg.chem.Atom' object has no attribute 'breakBond'

[rwest]

This is with 16f8145 ::

RMG execution initiated at Thu Nov 12 17:58:48 2009

################################################################
#                                                              #
#              RMG - Reaction Mechanism Generator              #
#                    Python Version 0.0.1                      #
#                         14 May 2009                          #
#                                                              #
#                 http://rmg.sourceforge.net/                  #
#                                                              #
################################################################

Found 1 database
Traceback (most recent call last):
  File "rmg.py", line 149, in <module>
    rmg.main.execute( args[0], options )
  File "/Users/rwest/XCodeProjects/RMGpy/source/rmg/main.py", line 96, in execute
    reactionModel, coreSpecies, reactionSystems = io.readInputFile(inputFile)
  File "/Users/rwest/XCodeProjects/RMGpy/source/rmg/io.py", line 295, in readInputFile
    reaction.kineticsDatabase.load(database[2] + os.sep)
  File "/Users/rwest/XCodeProjects/RMGpy/source/rmg/reaction.py", line 1650, in load
    family.load(path)
  File "/Users/rwest/XCodeProjects/RMGpy/source/rmg/reaction.py", line 636, in load
    self.loadTemplate(tempstr)
  File "/Users/rwest/XCodeProjects/RMGpy/source/rmg/reaction.py", line 1156, in loadTemplate
    self.generateProductTemplate()
  File "/Users/rwest/XCodeProjects/RMGpy/source/rmg/reaction.py", line 1191, in generateProductTemplate
    productStructure = self.applyRecipe(reactantStructure, unique=False)
  File "/Users/rwest/XCodeProjects/RMGpy/source/rmg/reaction.py", line 1277, in applyRecipe
    if not self.recipe.applyForward(reactantStructure, unique):
  File "/Users/rwest/XCodeProjects/RMGpy/source/rmg/reaction.py", line 529, in applyForward
    return self.__apply(struct, True, unique)
  File "/Users/rwest/XCodeProjects/RMGpy/source/rmg/reaction.py", line 490, in __apply
    atom1.breakBond(struct.getBonds(atom1), unique)
AttributeError: 'rmg.chem.Atom' object has no attribute 'breakBond'

[jwallen]

Seems to work okay for me. That function (among others) is new to the master/cantera branches as of this week since I decided to merge in the CO-less database. This is going to sound silly, but did you rebuild the Cython modules?

[rwest]

No, I didn't. Silly indeed!