From 884fe4f070721b4552e073821b8c1df1d6c9f540 Mon Sep 17 00:00:00 2001 From: ntalluri Date: Mon, 27 Nov 2023 17:23:40 -0600 Subject: [PATCH] precommit --- spras/mincostflow.py | 4 ++-- test/generate-inputs/test_generate_inputs.py | 12 ++++++------ 2 files changed, 8 insertions(+), 8 deletions(-) diff --git a/spras/mincostflow.py b/spras/mincostflow.py index a2476128..9f945690 100644 --- a/spras/mincostflow.py +++ b/spras/mincostflow.py @@ -138,8 +138,8 @@ def parse_output(raw_pathway_file, standardized_pathway_file): """ Convert a predicted pathway into the universal format - Although the algorithm constructs a directed network, the resulting network is treated as undirected. - This is because the flow within the network doesn't imply causal relationships between nodes. + Although the algorithm constructs a directed network, the resulting network is treated as undirected. + This is because the flow within the network doesn't imply causal relationships between nodes. The primary goal of the algorithm is node identification, not the identification of directional edges. @param raw_pathway_file: pathway file produced by an algorithm's run function diff --git a/test/generate-inputs/test_generate_inputs.py b/test/generate-inputs/test_generate_inputs.py index 7fa8807e..a5dcdfd2 100644 --- a/test/generate-inputs/test_generate_inputs.py +++ b/test/generate-inputs/test_generate_inputs.py @@ -10,12 +10,12 @@ OUTDIR = "test/generate-inputs/output/" EXPDIR = "test/generate-inputs/expected/" algo_exp_file = { - 'mincostflow': 'edges', - 'meo': 'edges', - 'omicsintegrator1': 'edges', - 'omicsintegrator2': 'edges', - 'domino': 'network', - 'pathlinker': 'network', + 'mincostflow': 'edges', + 'meo': 'edges', + 'omicsintegrator1': 'edges', + 'omicsintegrator2': 'edges', + 'domino': 'network', + 'pathlinker': 'network', 'allpairs': 'network' }