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Parameter Tuning Code Integration#193

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ntalluri wants to merge 22 commits intoReed-CompBio:masterReed-CompBio/spras:masterfrom ntalluri:param-tuning-integrationntalluri/spras:param-tuning-integrationCopy head branch name to clipboard

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Commits

Commits on Oct 28, 2024

• ideas for parameter tuning

  ntalluri

  committed
  1872c48

Commits on Oct 29, 2024

• update to ml code for centroid, update to eval code to have recall

  ntalluri

  committed
  7e0a990

Commits on Nov 1, 2024

• integrated all the code

  ntalluri

  committed
  d5d0461

Commits on Nov 4, 2024

• new updates to the integration

  ntalluri

  committed
  20d20bf

• clean up of comments

  ntalluri

  committed
  71aa43e

• updated test_ml.py to work with new updates

  ntalluri

  committed
  691673c

Commits on Nov 7, 2024

• in progress of testing

  ntalluri

  committed
  26178f9

Commits on Nov 14, 2024

• spras/con

  ntalluri

  committed
  a5b3205

Commits on Nov 15, 2024

• update to config.py to deal with ml and eval coupling

  ntalluri

  committed
  0aeda95

• added TODO comments on ideas to scale the binary data, still not sure what idea to use

  ntalluri

  committed
  46c87fc

• cleaned up file names and left TODOs

  ntalluri

  committed
  5265c53

• added the eval test cases, made a todo for config test case

  ntalluri

  committed
  9b7e687

• added algorithms to be used for eval code

  ntalluri

  committed
  23d1070

• pre commit test_evaluate.py

  ntalluri

  committed
  0408a20

• updated evalute.py

  ntalluri

  committed
  f1f58e7

• updated all config files

  ntalluri

  committed
  3507475

• cleane dup spras/evaluation.py

  ntalluri

  committed
  dd0359f

Commits on Nov 18, 2024

• updated spacing and added comments to the config files

  ntalluri

  committed
  ef15799

• updated evalution.py code

  ntalluri

  committed
  47dab1a

• cleaned up eval tests and added coupling tests to config

  ntalluri

  committed
  b3504b5

Commits on Dec 9, 2024

• change how plot is

  ntalluri

  committed
  dfcd302

• precommit

  ntalluri

  committed
  97a7d7b