From ec1e567c2e8828d9ca41fcc54afcd5f82de95a83 Mon Sep 17 00:00:00 2001 From: Martin Shetty <1972005+martukas@users.noreply.github.com> Date: Sun, 10 Nov 2024 13:48:20 -0800 Subject: [PATCH] Updates for Ubuntu 24.04 and debian bookworm (#1345) * updates for ubuntu24 * pipx ensure path * fix tests, bump pio * try again * fixed comon test and moved debugger * use poetry for debugger * common installs poetry * updated wiring generation scripts * docs should work * install graphviz with apt * exclude siargo links from checker * refactoring of bash scripts * fixup * more fixup * more cleanup and restructuring * more refactoring and lib bumps * more better * desktop files readded * docs lychee as part of script * try different way to install docker * run docker non interactive * gitignore refactoring * attempt fix * fix gui build * documentation improvements * bootstrap to branch * fix update script * fix update script * fix update script * relax python requirements in poetry * ocd patch update * update bootstrap docs for new raspi os, install ocd-patch during update --- .circleci/config.yml | 21 +- .github/workflows/docs.yml | 22 +- .gitignore | 72 +- docs/README.md | 14 +- docs/docs.sh | 152 +- docs/lychee.toml | 24 +- docs/poetry.lock | 1445 +++++++++++++++++ docs/purchasing/README.md | 4 +- docs/purchasing/make_parts.sh | 41 - docs/pyproject.toml | 30 + .../debug_lib => docs/scripts}/__init__.py | 0 docs/{purchasing => scripts}/make_parts.py | 51 +- docs/scripts/make_wiring.py | 82 + docs/wiring/README.md | 6 +- docs/wiring/decorate_table.py | 65 - docs/wiring/make_wiring.sh | 46 - docs/wiring/power_entry.yml | 4 +- manufacturing/.gitignore | 3 + manufacturing/internals/electronics/README.md | 2 +- pcb/.gitignore | 10 + quality-assurance/testing/README.md | 2 +- software/README.md | 9 +- .../{utils/rpi_config => bootstrap}/README.md | 6 +- .../rpi_config => bootstrap}/bootstrap.sh | 19 +- .../desktop_background.jpg | 0 .../{utils => bootstrap}/icons/rw_debug.png | 0 .../{utils => bootstrap}/icons/rw_inhale.png | 0 .../{utils => bootstrap}/icons/rw_logo.png | 0 .../icons/rw_logo_reverse.png | 0 .../icons/rw_logo_transparent.png | 0 .../rpi_config => bootstrap}/keyboard.xml | 0 .../{utils/rpi_config => bootstrap}/update.sh | 52 +- .../user/.config/libfm.conf | 0 software/bootstrap/user/Desktop/.gitignore | 1 + .../user/Desktop/Github | 2 +- .../user/Desktop/vent-debug.desktop | 4 +- .../user/Desktop/vent-demo.desktop | 2 +- .../user/Desktop/vent-gui.desktop | 2 +- .../user/Desktop/vent-update.desktop | 8 + software/common/.gitignore | 5 + software/common/base.sh | 125 ++ software/common/common.sh | 144 +- software/common/platformio.ini | 4 +- software/controller/.gitignore | 2 + software/controller/README.md | 6 +- software/controller/controller.sh | 169 +- software/controller/lib/debug/README.md | 2 +- software/controller/platformio.ini | 12 +- software/controller/platformio/README.md | 2 +- software/controller/platformio/stlink.cfg | 10 +- software/gui/.gitignore | 8 + software/gui/README.md | 2 +- software/gui/gui.sh | 170 +- software/tools/.gitignore | 2 + software/{utils/debug => tools}/README.md | 16 +- software/tools/debug.sh | 29 + .../debug/util => tools/debug}/__init__.py | 0 software/{utils => tools}/debug/debug_cli.py | 24 +- .../{utils => tools}/debug/debug_funcs.py | 0 software/tools/debug/debug_lib/__init__.py | 0 .../debug/debug_lib/controller_debug.py | 12 +- .../debug/debug_lib/debug_types.py | 0 .../debug/debug_lib/test_data.py | 4 +- .../debug/debug_lib/test_scenario.py | 2 +- .../debug/debug_lib/var_info.py | 4 +- .../{utils => tools}/debug/scripts/README.md | 0 .../debug/scripts/peek_dma.py | 0 .../debug/scripts/valve_calibration.py | 0 software/tools/debug/util/__init__.py | 0 .../{utils => tools}/debug/util/colors.py | 0 software/{utils => tools}/debug/util/error.py | 0 .../debug/util/serial_detect.py | 2 +- software/tools/miscellaneous/README.md | 4 + software/tools/miscellaneous/__init__.py | 0 software/tools/miscellaneous/decoder.py | 37 + .../miscellaneous/mock_cycle_controller.py | 64 + software/tools/poetry.lock | 1239 ++++++++++++++ software/tools/poetry.toml | 2 + software/tools/protocols/__init__.py | 0 software/tools/pyproject.toml | 37 + .../scenarios}/dummy.json | 0 .../scenarios}/iso_pressure_tests.csv | 0 .../scenarios}/iso_pressure_tests.json | 0 .../scenarios}/iso_volume_tests.csv | 0 .../scenarios}/iso_volume_tests.json | 0 software/tools/tests/__init__.py | 0 .../{utils/debug => tools/tests}/unit_test.py | 4 +- software/utils/README.md | 23 - software/utils/debug/debug.sh | 42 - software/utils/decoder.py | 31 - software/utils/mock_cycle_controller.py | 67 - software/utils/nanopb_pb2.py | 768 --------- .../user/Desktop/vent-update.desktop | 8 - 93 files changed, 3559 insertions(+), 1724 deletions(-) create mode 100644 docs/poetry.lock delete mode 100755 docs/purchasing/make_parts.sh create mode 100644 docs/pyproject.toml rename {software/utils/debug/debug_lib => docs/scripts}/__init__.py (100%) rename docs/{purchasing => scripts}/make_parts.py (74%) create mode 100644 docs/scripts/make_wiring.py delete mode 100755 docs/wiring/decorate_table.py delete mode 100755 docs/wiring/make_wiring.sh create mode 100644 manufacturing/.gitignore create mode 100644 pcb/.gitignore rename software/{utils/rpi_config => bootstrap}/README.md (94%) rename software/{utils/rpi_config => bootstrap}/bootstrap.sh (87%) rename software/{utils/rpi_config => bootstrap}/desktop_background.jpg (100%) rename software/{utils => bootstrap}/icons/rw_debug.png (100%) rename software/{utils => bootstrap}/icons/rw_inhale.png (100%) rename software/{utils => bootstrap}/icons/rw_logo.png (100%) rename software/{utils => bootstrap}/icons/rw_logo_reverse.png (100%) rename software/{utils => bootstrap}/icons/rw_logo_transparent.png (100%) rename software/{utils/rpi_config => bootstrap}/keyboard.xml (100%) rename software/{utils/rpi_config => bootstrap}/update.sh (69%) rename software/{utils/rpi_config => bootstrap}/user/.config/libfm.conf (100%) create mode 100644 software/bootstrap/user/Desktop/.gitignore rename software/{utils/rpi_config => bootstrap}/user/Desktop/Github (66%) rename software/{utils/rpi_config => bootstrap}/user/Desktop/vent-debug.desktop (68%) rename software/{utils/rpi_config => bootstrap}/user/Desktop/vent-demo.desktop (75%) rename software/{utils/rpi_config => bootstrap}/user/Desktop/vent-gui.desktop (77%) create mode 100755 software/bootstrap/user/Desktop/vent-update.desktop create mode 100644 software/common/.gitignore create mode 100755 software/common/base.sh create mode 100644 software/controller/.gitignore create mode 100644 software/gui/.gitignore create mode 100644 software/tools/.gitignore rename software/{utils/debug => tools}/README.md (91%) create mode 100755 software/tools/debug.sh rename software/{utils/debug/util => tools/debug}/__init__.py (100%) rename software/{utils => tools}/debug/debug_cli.py (98%) rename software/{utils => tools}/debug/debug_funcs.py (100%) create mode 100644 software/tools/debug/debug_lib/__init__.py rename software/{utils => tools}/debug/debug_lib/controller_debug.py (98%) rename software/{utils => tools}/debug/debug_lib/debug_types.py (100%) rename software/{utils => tools}/debug/debug_lib/test_data.py (98%) rename software/{utils => tools}/debug/debug_lib/test_scenario.py (99%) rename software/{utils => tools}/debug/debug_lib/var_info.py (98%) rename software/{utils => tools}/debug/scripts/README.md (100%) rename software/{utils => tools}/debug/scripts/peek_dma.py (100%) rename software/{utils => tools}/debug/scripts/valve_calibration.py (100%) create mode 100644 software/tools/debug/util/__init__.py rename software/{utils => tools}/debug/util/colors.py (100%) rename software/{utils => tools}/debug/util/error.py (100%) rename software/{utils => tools}/debug/util/serial_detect.py (99%) create mode 100644 software/tools/miscellaneous/README.md create mode 100644 software/tools/miscellaneous/__init__.py create mode 100755 software/tools/miscellaneous/decoder.py create mode 100755 software/tools/miscellaneous/mock_cycle_controller.py create mode 100644 software/tools/poetry.lock create mode 100644 software/tools/poetry.toml create mode 100644 software/tools/protocols/__init__.py create mode 100644 software/tools/pyproject.toml rename software/{utils/debug/test_scenarios => tools/scenarios}/dummy.json (100%) rename software/{utils/debug/test_scenarios => tools/scenarios}/iso_pressure_tests.csv (100%) rename software/{utils/debug/test_scenarios => tools/scenarios}/iso_pressure_tests.json (100%) rename software/{utils/debug/test_scenarios => tools/scenarios}/iso_volume_tests.csv (100%) rename software/{utils/debug/test_scenarios => tools/scenarios}/iso_volume_tests.json (100%) create mode 100644 software/tools/tests/__init__.py rename software/{utils/debug => tools/tests}/unit_test.py (96%) delete mode 100644 software/utils/README.md delete mode 100755 software/utils/debug/debug.sh delete mode 100755 software/utils/decoder.py delete mode 100755 software/utils/mock_cycle_controller.py delete mode 100644 software/utils/nanopb_pb2.py delete mode 100755 software/utils/rpi_config/user/Desktop/vent-update.desktop diff --git a/.circleci/config.yml b/.circleci/config.yml index ee8b95fdd..958dee8c9 100644 --- a/.circleci/config.yml +++ b/.circleci/config.yml @@ -24,7 +24,7 @@ jobs: common-tests: machine: - image: ubuntu-2204:current + image: ubuntu-2404:current environment: GIT_LFS_SKIP_SMUDGE: 1 steps: @@ -40,14 +40,14 @@ jobs: name: Run tests & generate coverage reports command: | ./software/common/common.sh test --cov --no-checks - ./software/common/common.sh cov_cleanup + ./software/common/common.sh cov-cleanup - codecov/upload: file: './software/common/coverage_reports/coverage.info' flags: 'common' controller-tests: machine: - image: ubuntu-2204:current + image: ubuntu-2404:current environment: GIT_LFS_SKIP_SMUDGE: 1 resource_class: large @@ -59,19 +59,19 @@ jobs: sudo rm -rf /var/lib/apt/lists/* export DEBIAN_FRONTEND=noninteractive export FORCED_ROOT=1 - ./software/controller/controller.sh install + ./software/common/common.sh install - run: name: Run tests & generate coverage reports command: | ./software/controller/controller.sh test --cov --no-checks - ./software/controller/controller.sh cov_cleanup + ./software/controller/controller.sh cov-cleanup - codecov/upload: file: './software/controller/coverage_reports/coverage.info' flags: 'controller' gui-tests: machine: - image: ubuntu-2204:current + image: ubuntu-2404:current resource_class: large environment: GIT_LFS_SKIP_SMUDGE: 1 @@ -101,7 +101,7 @@ jobs: debug-tests: machine: - image: ubuntu-2204:current + image: ubuntu-2404:current environment: GIT_LFS_SKIP_SMUDGE: 1 resource_class: medium @@ -113,11 +113,14 @@ jobs: sudo rm -rf /var/lib/apt/lists/* export DEBIAN_FRONTEND=noninteractive export FORCED_ROOT=1 - ./software/controller/controller.sh install + ./software/common/common.sh install + ./software/common/common.sh generate - run: name: Run unit tests command: | - pytest software/utils/debug/unit_test.py -v + cd software/tools + poetry install --no-interaction + poetry run pytest -v workflows: diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml index 9d5314ae4..2574a2157 100644 --- a/.github/workflows/docs.yml +++ b/.github/workflows/docs.yml @@ -23,17 +23,17 @@ jobs: - name: Pull in relevant images only run: git lfs pull -I "docs/wiring/images/*.png" - name: Build docs - run: cd docs - && ./docs.sh build - && touch _build/html/.nojekyll - - name: Link Checker - uses: lycheeverse/lychee-action@v1.8.0 - with: - fail: true - # Check all markdown and html files - args: -c docs/lychee.toml . - env: - GITHUB_TOKEN: ${{secrets.GITHUB_TOKEN}} + run: ./docs/docs.sh build + - name: Check links + run: ./docs/docs.sh check +# - name: Link Checker +# uses: lycheeverse/lychee-action@v1.8.0 +# with: +# fail: true +# # Check all markdown and html files +# args: -c docs/lychee.toml . +# env: +# GITHUB_TOKEN: ${{secrets.GITHUB_TOKEN}} - name: Deploy to Github Pages if: ${{ github.ref == 'refs/heads/master' }} uses: JamesIves/github-pages-deploy-action@v4 diff --git a/.gitignore b/.gitignore index f3fa98b06..4299c9af1 100644 --- a/.gitignore +++ b/.gitignore @@ -1,30 +1,23 @@ -#network protocol output files -software/common/generated_libs/protocols/*.c -software/common/generated_libs/protocols/*.h -software/gui/src/protocols/*.cc -software/gui/src/protocols/*.h -software/utils/debug/protocols/* +!.gitignore -build/ -build_autotests/ -.pio/ +# OS install -source/config/* +.DS_Store *.app *.desktop *.user *.log -!.gitignore -#IDE -software/controller/CMakeLists* -software/controller/.gitignore -software/common/CMakeLists* -software/common/.gitignore -cmake-build-*/ -.idea/ +# IDE: VSCode +.vscode + +# IDE: JetBrains .idea -.vscode/ +.idea/ +CMakeLists.txt.user +cmake-build-*/ + +# IDE: other .ctags ctags tags @@ -32,34 +25,29 @@ tags cscope.out *~ -#CAD/Inventor -*.lck -OldVersions/ - -.DS_Store .clangd/ .*.swp *.map -__pycache__/ last_graph.dat -.pytype/ - -coverage_reports - -# KiCAD backups -*.sch-bak -*.kicad_pcb-bak -*.bak -# KiCAD temp/unneeded cache files -_autosave-* -*.000 -fp-info-cache -# (project symbol cache library not needed as all symbols kept in RespiraWorks libraries) -*-cache.lib #performance test data local_data/ -test_data/ -#Conan created files -CMakeUserPresets.json +# Byte-compiled / optimized / DLL files +__pycache__/ +*.py[cod] +*$py.class + +# Environments +.env +.venv +env/ +venv/ +ENV/ +env.bak/ +venv.bak/ + +# mypy +.mypy_cache/ +.dmypy.json +dmypy.json diff --git a/docs/README.md b/docs/README.md index a68759356..28c0193b7 100644 --- a/docs/README.md +++ b/docs/README.md @@ -1,16 +1,16 @@ # Documentation -The documentation created here is written in reStructuredTexT and generated using [Sphinx](https://www.sphinx-doc.org/en/master/) via a Github action. +The documentation created here is written in reStructuredTexT and generated using [Sphinx](https://www.sphinx-doc.org/en/master/) via a GitHub action. ## reStructuredText -reStructured text is similar to Markdown in that it is ASCII formatted text that is mostly human readable and contains directives that specify how the text should be rendered in HTML, and other output formats. +reStructured text is similar to Markdown in that it is ASCII formatted text that is mostly human-readable and contains directives that specify how the text should be rendered in HTML, and other output formats. reStructuredText is more complex than Markdown and allows for much greater flexibility in formatting as well as additional features such as *directives* that act like variables/macros that are defined once and expanded in place. ## Document Generation -The Github action rules can be found in `.github/workflows/docs.yml` +The GitHub action rules can be found in `.github/workflows/docs.yml` C++ API documentation is generated using [Doxygen](https://github.com/doxygen/doxygen) @@ -34,7 +34,13 @@ To generate the documentation, run: ./docs.sh build ``` -If the directories are polluted and you want a clean slate: +To render wiring harnesses only: + +```shell +./docs.sh wire ./path/to/dir/or/file.yml +``` + +If the directories are polluted, and you want a clean slate: ```shell ./docs.sh clean ``` diff --git a/docs/docs.sh b/docs/docs.sh index 7c6977f6c..7528e4767 100755 --- a/docs/docs.sh +++ b/docs/docs.sh @@ -14,41 +14,27 @@ # See the License for the specific language governing permissions and # limitations under the License. -OUTPUT_DIR=_build - -# Fail if any command fails -set -e -set -o pipefail - -# Print each command as it executes -if [ -n "$VERBOSE" ]; then - set -o xtrace -fi - # This script should work no matter where you call it from. -cd "$(dirname "$0")" +pushd "$(dirname "$0")" > /dev/null || exit_fail -EXIT_FAILURE=1 -EXIT_SUCCESS=0 +. ../software/common/base.sh -# Check if Linux -PLATFORM="$(uname -s)" -if [ $PLATFORM != "Linux" ]; then - echo "Error: This script only supports 'Linux'. You have $PLATFORM." - exit $EXIT_FAILURE -fi +ensure_linux + +OUTPUT_DIR=_build print_help() { cat < Render wiring harness diagrams for specified path, which may be a file or a directory + view Open generated documentation in browser + check Check for broken links + help/-h Display this help info EOF } @@ -57,36 +43,50 @@ clean_all() { # \todo clean intermediate files from wiring and parts } -clean_dir() { - dir_name=$1 - if [ -d "$dir_name" ]; then - echo "Removing $dir_name" - rm -rf "$dir_name" - return $EXIT_SUCCESS - elif [ -f "$dir_name" ]; then - echo "File with this name already exists, not a directory." - return $EXIT_FAILURE +install_linux() { + install_py + sudo apt update + sudo apt --yes install \ + make \ + doxygen \ + graphviz + sudo apt --yes install \ + apt-transport-https \ + ca-certificates \ + curl \ + software-properties-common + curl -fsSL https://download.docker.com/linux/ubuntu/gpg \ + | sudo gpg --dearmor -o /usr/share/keyrings/docker-archive-keyring.gpg + echo "deb [arch=$(dpkg --print-architecture) signed-by=/usr/share/keyrings/docker-archive-keyring.gpg] https://download.docker.com/linux/ubuntu $(lsb_release -cs) stable" \ + | sudo tee /etc/apt/sources.list.d/docker.list >/dev/null + + if [ "$(getent group docker)" ]; then + echo "group docker already exists." + else + sudo addgroup docker fi + + sudo usermod -aG docker "${USER}" + + sudo apt update + apt-cache policy docker-ce + sudo apt --yes install docker-ce + + docker pull lycheeverse/lychee } -install_linux() { - sudo apt-get update - sudo apt-get install -y \ - make \ - doxygen \ - graphviz \ - python3-pip - pip3 install -U pip - pip3 install sphinx-rtd-theme breathe sphinx-sitemap mlx.traceability wireviz pandas - source ${HOME}/.profile - echo "If you wish to use \`./docs.sh check\` to check validity of links locally, please follow installation instructions at https://github.com/lycheeverse/lychee" +process_wiring() { + source "${HOME}/.profile" + poetry install --no-root --quiet + poetry run wiring "$1" } build_all() { - source ${HOME}/.profile - ./wiring/make_wiring.sh - ./purchasing/make_parts.sh - make html + source "${HOME}/.profile" + poetry install --no-root --quiet + poetry run wiring ./wiring + poetry run parts ./purchasing/parts.json + poetry run make html } launch_browser() { @@ -94,8 +94,8 @@ launch_browser() { } check_links() { - echo "If you wish to use \`./docs.sh check\` to check validity of links locally, please follow installation instructions at https://github.com/lycheeverse/lychee" - lychee .. + touch ./_build/html/.nojekyll + docker run --init --rm -w /input -v "$(pwd)/..":/input lycheeverse/lychee -c ./docs/lychee.toml --no-ignore . } ######## @@ -104,58 +104,54 @@ check_links() { if [ "$1" == "help" ] || [ "$1" == "-h" ]; then print_help - exit $EXIT_SUCCESS + exit_good ########### # INSTALL # ########### elif [ "$1" == "install" ]; then - if [ "$EUID" -eq 0 ] && [ -z "$FORCED_ROOT" ]; then - echo "Please do not run install with root privileges!" - exit $EXIT_FAILURE - fi + ensure_not_root install_linux - exit $EXIT_SUCCESS + exit_good ######### # CLEAN # ######### elif [ "$1" == "clean" ]; then clean_all - exit $EXIT_SUCCESS + exit_good -######## -# MAKE # -######## +######### +# BUILD # +######### elif [ "$1" == "build" ]; then - if [ "$EUID" -eq 0 ] && [ -z "$FORCED_ROOT" ]; then - echo "Please do not run build with root privileges!" - exit $EXIT_FAILURE - fi + ensure_not_root build_all - exit $EXIT_SUCCESS + exit_good + +######### +# BUILD # +######### +elif [ "$1" == "wire" ]; then + ensure_not_root + process_wiring "$2" + exit_good ######## # VIEW # ######## elif [ "$1" == "view" ]; then - if [ "$EUID" -eq 0 ] && [ -z "$FORCED_ROOT" ]; then - echo "Please do not run view with root privileges!" - exit $EXIT_FAILURE - fi + ensure_not_root launch_browser - exit $EXIT_SUCCESS + exit_good ######### # CHECK # ######### elif [ "$1" == "check" ]; then - if [ "$EUID" -eq 0 ] && [ -z "$FORCED_ROOT" ]; then - echo "Please do not run view with root privileges!" - exit $EXIT_FAILURE - fi + ensure_not_root check_links - exit $EXIT_SUCCESS + exit_good ################ # ERROR & HELP # @@ -164,5 +160,5 @@ else echo "ERROR: Bad command or insufficient parameters!" echo print_help - exit $EXIT_FAILURE + exit_fail fi diff --git a/docs/lychee.toml b/docs/lychee.toml index d5dfd4acc..48be949d3 100644 --- a/docs/lychee.toml +++ b/docs/lychee.toml @@ -1,10 +1,21 @@ ############################# Display ############################# +# Verbose program output +# Accepts log level: "error", "warn", "info", "debug", "trace" +#verbose = "info" + # Don't show interactive progress bar while checking links. no_progress = true +# Path to summary output file. +#output = ".config.dummy.report.md" + ############################# Runtime ############################# +# Number of threads to utilize. +# Defaults to number of cores available to the system if omitted. +threads = 2 + # Maximum number of allowed redirects. max_redirects = 5 @@ -47,7 +58,7 @@ headers = [] # HTTP basic auth support. This will be the username and password passed to the # authorization HTTP header. See # -basic_auth = "user:pwd" +#basic_auth = "user:pwd" ############################# Exclusions ########################## @@ -80,15 +91,16 @@ exclude = [ '.*\.uflowvalve.com\.*', '.*\.valispace.com\.*', '.*\wonsmart-motor.en.made-in-china.com\.*', - '.*\.raspberrypi.com\.*' + '.*\.raspberrypi.com\.*', + '.*\.servoflo.com\.*', + '.*\.rawgit.com\.*', ] # Exclude these filesystem paths from getting checked. exclude_path = [ - "../software/common/coverage_reports", - "../software/controller/coverage_reports", - "../software/gui/coverage_reports", - "../software/gui/src/third_party" + "software/common/coverage_reports", + "software/controller/coverage_reports", + "software/gui/coverage_reports", ] # Exclude all private IPs from checking. diff --git a/docs/poetry.lock b/docs/poetry.lock new file mode 100644 index 000000000..7803d2996 --- /dev/null +++ b/docs/poetry.lock @@ -0,0 +1,1445 @@ +# This file is automatically @generated by Poetry 1.8.4 and should not be changed by hand. + +[[package]] +name = "alabaster" +version = "1.0.0" +description = "A light, configurable Sphinx theme" +optional = false +python-versions = ">=3.10" +files = [ + {file = "alabaster-1.0.0-py3-none-any.whl", hash = "sha256:fc6786402dc3fcb2de3cabd5fe455a2db534b371124f1f21de8731783dec828b"}, + {file = "alabaster-1.0.0.tar.gz", hash = "sha256:c00dca57bca26fa62a6d7d0a9fcce65f3e026e9bfe33e9c538fd3fbb2144fd9e"}, +] + +[[package]] +name = "babel" +version = "2.16.0" +description = "Internationalization utilities" +optional = false +python-versions = ">=3.8" +files = [ + {file = "babel-2.16.0-py3-none-any.whl", hash = "sha256:368b5b98b37c06b7daf6696391c3240c938b37767d4584413e8438c5c435fa8b"}, + {file = "babel-2.16.0.tar.gz", hash = "sha256:d1f3554ca26605fe173f3de0c65f750f5a42f924499bf134de6423582298e316"}, +] + +[package.extras] +dev = ["freezegun (>=1.0,<2.0)", "pytest (>=6.0)", "pytest-cov"] + +[[package]] +name = "breathe" +version = "4.35.0" +description = "Sphinx Doxygen renderer" +optional = false +python-versions = "*" +files = [ + {file = "breathe-4.35.0-py3-none-any.whl", hash = "sha256:52c581f42ca4310737f9e435e3851c3d1f15446205a85fbc272f1f97ed74f5be"}, + {file = "breathe-4.35.0.tar.gz", hash = "sha256:5165541c3c67b6c7adde8b3ecfe895c6f7844783c4076b6d8d287e4f33d62386"}, +] + +[package.dependencies] +docutils = ">=0.12" +Sphinx = ">=4.0,<5.0.0 || >5.0.0" + +[[package]] +name = "certifi" +version = "2024.8.30" +description = "Python package for providing Mozilla's CA Bundle." +optional = false +python-versions = ">=3.6" +files = [ + {file = "certifi-2024.8.30-py3-none-any.whl", hash = "sha256:922820b53db7a7257ffbda3f597266d435245903d80737e34f8a45ff3e3230d8"}, + {file = "certifi-2024.8.30.tar.gz", hash = "sha256:bec941d2aa8195e248a60b31ff9f0558284cf01a52591ceda73ea9afffd69fd9"}, +] + +[[package]] +name = "charset-normalizer" +version = "3.4.0" +description = "The Real First Universal Charset Detector. 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--- a/docs/purchasing/README.md +++ b/docs/purchasing/README.md @@ -38,6 +38,4 @@ The syntax/semantics for a part definition are as follows: ## Scripts -[make_parts.py](make_parts.py) - reads [parts.json](parts.json) and from it generates `parts.rst`,with tables and link nodes which can then be rendered by sphinx - -[make_parts.sh](make_parts.sh) - wrapper script that ensures correct operating system and runs the python script from within this directory +The `parts.rst` file, with tables and link nodes will be generated as when you run [docs/docs.sh build](../docs.sh). diff --git a/docs/purchasing/make_parts.sh b/docs/purchasing/make_parts.sh deleted file mode 100755 index 9b713f43f..000000000 --- a/docs/purchasing/make_parts.sh +++ /dev/null @@ -1,41 +0,0 @@ -#!/bin/bash - -# Copyright 2020-2022, RespiraWorks -# -# Licensed under the Apache License, Version 2.0 (the "License"); -# you may not use this file except in compliance with the License. -# You may obtain a copy of the License at -# -# http://www.apache.org/licenses/LICENSE-2.0 -# -# Unless required by applicable law or agreed to in writing, software -# distributed under the License is distributed on an "AS IS" BASIS, -# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. -# See the License for the specific language governing permissions and -# limitations under the License. - -# Fail if any command fails -set -e -set -o pipefail - -# Print each command as it executes -if [ -n "$VERBOSE" ]; then - set -o xtrace -fi - -# This script should work no matter where you call it from. -cd "$(dirname "$0")" - -EXIT_FAILURE=1 -EXIT_SUCCESS=0 - -# Check if Linux -PLATFORM="$(uname -s)" -if [ $PLATFORM != "Linux" ]; then - echo "Error: This script only supports 'Linux'. You have $PLATFORM." - exit $EXIT_FAILURE -fi - -./make_parts.py - -exit $EXIT_SUCCESS diff --git a/docs/pyproject.toml b/docs/pyproject.toml new file mode 100644 index 000000000..4be3fe539 --- /dev/null +++ b/docs/pyproject.toml @@ -0,0 +1,30 @@ +[tool.poetry] +name = "docs" +version = "0.1.0" +description = "Respiraworks docs generation script" +authors = ["Martin Shetty <1972005+martukas@users.noreply.github.com>"] +readme = "README.md" +packages = [ + {include = "scripts"} +] + +[tool.poetry.dependencies] +python = ">=3.10" +graphviz = "^0.20.3" +wireviz = "^0.4.1" +sphinx-rtd-theme = "^3.0.1" +breathe = "^4.35.0" +sphinx-sitemap = "^2.6.0" +mlx-traceability = "^11.6.0" +pandas = "^2.2.3" + +[tool.poetry.group.dev.dependencies] +pytest = "^8.3.3" + +[build-system] +requires = ["poetry-core"] +build-backend = "poetry.core.masonry.api" + +[tool.poetry.scripts] +wiring = "scripts.make_wiring:main" +parts = "scripts.make_parts:main" diff --git a/software/utils/debug/debug_lib/__init__.py b/docs/scripts/__init__.py similarity index 100% rename from software/utils/debug/debug_lib/__init__.py rename to docs/scripts/__init__.py diff --git a/docs/purchasing/make_parts.py b/docs/scripts/make_parts.py similarity index 74% rename from docs/purchasing/make_parts.py rename to docs/scripts/make_parts.py index 0187b5ae0..761f9145c 100755 --- a/docs/purchasing/make_parts.py +++ b/docs/scripts/make_parts.py @@ -22,20 +22,20 @@ """ +import argparse import json from pathlib import Path -def from_json(file_name): +def from_json(file_name: Path): ret = {} - with open(file_name, "r") as json_file: - j = json.load(json_file) - for tsd in j: - ret[tsd["pn"]] = tsd + j = json.loads(file_name.read_text()) + for tsd in j: + ret[tsd["pn"]] = tsd return ret -def make_table_line(supplier_data, unit): +def make_table_line(supplier_data, unit) -> str: price = supplier_data["price"] price_units = supplier_data["price_units"] price_string = f"{price}" @@ -49,7 +49,7 @@ def make_table_line(supplier_data, unit): return ret -def make_table(supplier_data, unit): +def make_table(supplier_data, unit) -> str: ret = "" ret += ".. list-table::\n" ret += " :widths: 20 30 10 10\n" @@ -67,7 +67,7 @@ def make_table(supplier_data, unit): return ret -def make_rst(part_data): +def make_rst(part_data) -> str: pn = part_data.get("pn", None) notes = part_data.get("notes", None) manufacturer = part_data.get("manufacturer", None) @@ -94,14 +94,8 @@ def make_rst(part_data): return ret -def main(): - - in_file = Path("parts.json") +def generate_parts_rst(in_file: Path, out_file: Path) -> None: parts = from_json(in_file) - - out_file = Path("parts.rst") - print(f"Generating {out_file}:") - with open(out_file, "w") as f: f.write("Parts\n") f.write("-----\n") @@ -111,5 +105,32 @@ def main(): f.write(make_rst(parts[key])) +def json_arg(path: str) -> Path: + ret = Path(path) + if ret.suffix != ".json": + raise argparse.ArgumentTypeError(f"Not a json file: {ret}") + if not ret.is_file(): + raise argparse.ArgumentTypeError(f"File not found: {ret}") + return ret + + +def main(): + parser = argparse.ArgumentParser() + + parser.add_argument( + "file", + type=json_arg, + help="File to process", + ) + + args = parser.parse_args() + + in_file = args.file + out_file = in_file.with_suffix(".rst") + + print(f"Generating {in_file} -> {out_file}:") + generate_parts_rst(in_file, out_file) + + if __name__ == "__main__": main() diff --git a/docs/scripts/make_wiring.py b/docs/scripts/make_wiring.py new file mode 100644 index 000000000..c87326ff2 --- /dev/null +++ b/docs/scripts/make_wiring.py @@ -0,0 +1,82 @@ +__copyright__ = "Copyright 2024 RespiraWorks" + +__license__ = """ + + Copyright 2022 RespiraWorks + + Licensed under the Apache License, Version 2.0 (the "License"); + you may not use this file except in compliance with the License. + You may obtain a copy of the License at + + http://www.apache.org/licenses/LICENSE-2.0 + + Unless required by applicable law or agreed to in writing, software + distributed under the License is distributed on an "AS IS" BASIS, + WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + See the License for the specific language governing permissions and + limitations under the License. + +""" + +import argparse + +from wireviz import wireviz +from pathlib import Path +import pandas + + +def path_arg(path: str) -> Path: + ret = Path(path) + if not ret.exists(): + raise argparse.ArgumentTypeError(f"Path does not exist: {ret}") + return ret + + +def decorate_table(file: Path) -> None: + """ + Decorates tab-separated-table from wireviz, creating RST links + Make every entry in the P/N column, e.g.: + pn1234 + look like this: + :ref:`pn1234` + """ + df = pandas.read_csv(file, sep="\t", header=0) + for d in df["P/N"]: + newd = f":ref:`{d}`" + df["P/N"] = df["P/N"].replace([d], newd) + + df.to_csv(file, sep="\t", float_format="%g", index=False) + + +def generate_wiring_diagram(yaml_file: Path) -> None: + """ """ + print(f"Generating wiring diagram for {yaml_file}") + wireviz.parse(yaml_file, output_formats=("gv", "html", "png", "svg", "tsv")) + tsv_file = yaml_file.parent / (yaml_file.stem + ".bom.tsv") + print(f"Injecting purchasing xrefs into {tsv_file}") + decorate_table(tsv_file) + + +def main(): + parser = argparse.ArgumentParser() + + parser.add_argument( + "path", + type=path_arg, + help="File or directory to process", + ) + + args = parser.parse_args() + + if args.path.is_dir(): + print(f"Processing all files in {args.path}") + for file in args.path.rglob("**/*.yml"): + generate_wiring_diagram(file) + elif args.path.is_file(): + if args.path.suffix not in (".yml", ".yaml"): + raise argparse.ArgumentTypeError(f"Not a YAML file: {args.path}") + generate_wiring_diagram(args.path) + + +if __name__ == "__main__": + main() diff --git a/docs/wiring/README.md b/docs/wiring/README.md index b8af45f59..555e48533 100644 --- a/docs/wiring/README.md +++ b/docs/wiring/README.md @@ -27,6 +27,8 @@ Where ## Scripts -[decorate_table.py](decorate_table.py) - takes a `*.bom.tsv` file and modifies it so that each entry in the `P/N` column is wrapped in RST link-to-reference syntax. Thus, when a the table is embedded in an RST file, the part numbers are rendered as links to the purchasing/parts page +To render the wiring documentation, use [docs/docs.sh](../docs.sh) script as follows: -[make_wiring.sh](make_wiring.sh) - runs wireviz to generate BOM and diagram, then runs `decorate_table.py` to add links to BOM +```shell +./docs.sh wire ./path/to/dir/or/file.yml +``` diff --git a/docs/wiring/decorate_table.py b/docs/wiring/decorate_table.py deleted file mode 100755 index d6d45502e..000000000 --- a/docs/wiring/decorate_table.py +++ /dev/null @@ -1,65 +0,0 @@ -#!/usr/bin/env python3 - -# Decorates tab-separated-table from wireviz, creating RST links -# Make every entry in the P/N column, e.g.: -# pn1234 -# look like this: -# :ref:`pn1234` - -__copyright__ = "Copyright 2022 RespiraWorks" - -__license__ = """ - - Copyright 2022 RespiraWorks - - Licensed under the Apache License, Version 2.0 (the "License"); - you may not use this file except in compliance with the License. - You may obtain a copy of the License at - - http://www.apache.org/licenses/LICENSE-2.0 - - Unless required by applicable law or agreed to in writing, software - distributed under the License is distributed on an "AS IS" BASIS, - WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - See the License for the specific language governing permissions and - limitations under the License. - -""" - -import argparse -import pandas -from pathlib import Path - - -def main(): - parser = argparse.ArgumentParser() - parser.add_argument( - "file", - type=str, - help="File to process", - ) - - args = parser.parse_args() - - if not args.file: - print(f"No input file name provided {args.preset}") - return - - in_file = Path(args.file) - if not in_file.is_file(): - print(f"Input file does not exist {args.file}") - return - elif in_file.suffix == ".tsv": - df = pandas.read_csv(in_file, sep="\t", header=0) - for d in df["P/N"]: - newd = f":ref:`{d}`" - df["P/N"] = df["P/N"].replace([d], newd) - - pn_df = pandas.DataFrame(df, columns=["P/N"]) - - out_file = in_file - df.to_csv(out_file, sep="\t", float_format="%g", index=False) - - -if __name__ == "__main__": - main() diff --git a/docs/wiring/make_wiring.sh b/docs/wiring/make_wiring.sh deleted file mode 100755 index 2f8b317a7..000000000 --- a/docs/wiring/make_wiring.sh +++ /dev/null @@ -1,46 +0,0 @@ -#!/bin/bash - -# Copyright 2020-2022, RespiraWorks -# -# Licensed under the Apache License, Version 2.0 (the "License"); -# you may not use this file except in compliance with the License. -# You may obtain a copy of the License at -# -# http://www.apache.org/licenses/LICENSE-2.0 -# -# Unless required by applicable law or agreed to in writing, software -# distributed under the License is distributed on an "AS IS" BASIS, -# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. -# See the License for the specific language governing permissions and -# limitations under the License. - -# Fail if any command fails -set -e -set -o pipefail - -# Print each command as it executes -if [ -n "$VERBOSE" ]; then - set -o xtrace -fi - -# This script should work no matter where you call it from. -cd "$(dirname "$0")" - -EXIT_FAILURE=1 -EXIT_SUCCESS=0 - -# Check if Linux -PLATFORM="$(uname -s)" -if [ $PLATFORM != "Linux" ]; then - echo "Error: This script only supports 'Linux'. You have $PLATFORM." - exit $EXIT_FAILURE -fi - -for filename in ./*.yml; do - stripped_name=$(basename "$filename" .yml) - echo "Processing wiring documentation for '${stripped_name}'" - wireviz ${filename} - ./decorate_table.py ${stripped_name}.bom.tsv -done - -exit $EXIT_SUCCESS diff --git a/docs/wiring/power_entry.yml b/docs/wiring/power_entry.yml index d8e042537..b9e443c7a 100644 --- a/docs/wiring/power_entry.yml +++ b/docs/wiring/power_entry.yml @@ -26,7 +26,6 @@ connectors: F1: pn: ec-qctf style: simple - autogenerate: true type: 4.7mm QC Term Female subtype: 14-16awg mpn: 3-520276-2 @@ -35,7 +34,6 @@ connectors: F2: pn: ec-ring style: simple - autogenerate: true type: M4 Ring Term subtype: 14-16awg mpn: 0193230008 @@ -80,7 +78,7 @@ connections: - W1: [1-2] - X2: [1-2] - - - F1 + - F1. - W2: [1-2] - X2: [3-4] - diff --git a/manufacturing/.gitignore b/manufacturing/.gitignore new file mode 100644 index 000000000..73e7b7427 --- /dev/null +++ b/manufacturing/.gitignore @@ -0,0 +1,3 @@ +#CAD/Inventor +*.lck +OldVersions/ diff --git a/manufacturing/internals/electronics/README.md b/manufacturing/internals/electronics/README.md index d352670d5..7bf7a49b0 100644 --- a/manufacturing/internals/electronics/README.md +++ b/manufacturing/internals/electronics/README.md @@ -67,7 +67,7 @@ Make sure the PEM nuts `[A2]` are installed properly into the support frame `[A1 The Raspberry Pi serves as the user interface computer for the ventilator. It should be installed onto the PCB **before** attaching the PCB to the support frame. * install a heat sinks `[A6]` onto the Raspberry Pi `[A5]` -* set up the memory card `[A7]` with the appropriate operating system and software as described in the [software deployment instructions](../../../software/utils/rpi_config). +* set up the memory card `[A7]` with the appropriate operating system and software as described in the [software deployment instructions](../../../software/bootstrap). * install memory card into the RaspberryPi * Install the 22mm spacers `[A10]` onto the PCB `[A3]` at the location where the Raspberry Pi should be mounted. * Install the Raspberry Pi `[A5]` onto the PCB `[A3]` using bolts and washers `[A11-12]`. diff --git a/pcb/.gitignore b/pcb/.gitignore new file mode 100644 index 000000000..fde52511b --- /dev/null +++ b/pcb/.gitignore @@ -0,0 +1,10 @@ +# KiCAD backups +*.sch-bak +*.kicad_pcb-bak +*.bak +# KiCAD temp/unneeded cache files +_autosave-* +*.000 +fp-info-cache +# (project symbol cache library not needed as all symbols kept in RespiraWorks libraries) +*-cache.lib diff --git a/quality-assurance/testing/README.md b/quality-assurance/testing/README.md index 15b021291..14f78f417 100644 --- a/quality-assurance/testing/README.md +++ b/quality-assurance/testing/README.md @@ -125,4 +125,4 @@ scenarios. As of writing, we have used the tool for automating the collection of We plan to expand its use to more automated tests and apply it as part of the shared hardware-in-the-loop testing infrastructure described above. -More information about the debug interface is available [here](../../software/utils/debug). +More information about the debug interface is available [here](../../software/tools). diff --git a/software/README.md b/software/README.md index f879873e0..5bb41512a 100644 --- a/software/README.md +++ b/software/README.md @@ -7,14 +7,9 @@ These are utilities for bench testing with mechanical lung simulators only. It i ## Contents +* [bootstrap](bootstrap) - initial deployment scripts for all software directly via the Raspberry pi integrated in a ventilator. Can also be used to configure a linux machine for software development or integration testing. * [design](design) - documents on software architecture and requirements * [common](common) - code common to both controller and GUI executables * [controller](controller) - code for pneumatic system controller (stm32) +* [tools](tools) - controller debug client and other tools for calibration, configuration and testing * [gui](gui) - code for the ventilator graphical interface (Qt) -* [utils](utils) - scripts for debugging controller and mocking communications interface - -## Quick start - -If a proper enclosed unit is built as described under [manufacturing](../manufacturing), it should be possible to deploy all GUI and controller software directly via the Raspberry pi that is integrated into the ventilator unit. - -Scripts for doing so are available under [utils/rpi_config](utils/rpi_config). diff --git a/software/utils/rpi_config/README.md b/software/bootstrap/README.md similarity index 94% rename from software/utils/rpi_config/README.md rename to software/bootstrap/README.md index 6ecf6a8bd..ad931c58a 100644 --- a/software/utils/rpi_config/README.md +++ b/software/bootstrap/README.md @@ -12,7 +12,7 @@ The first few configuration steps must be done manually when writing the operati * Use an SD card of at least 32GB. Building the software can be a resource-greedy process. * Flash the SD card using the [Raspberry Pi Imager](https://www.raspberrypi.com/software/) making sure to configure it as follows: - * **IMPORTANT:** Click 'CHOOSE OS' > 'Raspberry Pi OS (Other)' and select the `Raspberry Pi OS (64-bit)` release of the Raspberry Pi OS. Other versions have not been tested to work. More specifically should be the `v11 Bullseye 64 bits (January 28th 2022)` release ([download link](https://downloads.raspberrypi.org/raspios_arm64/images/raspios_arm64-2022-01-28/)). + * **IMPORTANT:** Click 'CHOOSE OS' > 'Raspberry Pi OS (Other)' and select the `Raspberry Pi OS (64-bit)` release of the Raspberry Pi OS. Other versions have not been tested to work. More specifically should be the `v12 Bookworm 64 bits (October 28th 2024)` release ([download link](https://downloads.raspberrypi.com/raspios_arm64/images/raspios_arm64-2024-10-28/)). * Click 'STORAGE' and select your SD card * Click the gear icon in the lower right corner, and set up the following parameters: * hostname (recommended): `rw-ventilator` - could make it something else unique if you have multiple prototypes on your network @@ -36,7 +36,7 @@ Whether by `ssh` or attached keyboard, copy and paste this command into a termin ```shell -bash <(wget -qO- https://github.com/RespiraWorks/Ventilator/raw/master/software/utils/rpi_config/bootstrap.sh) +bash <(wget -qO- https://github.com/RespiraWorks/Ventilator/raw/maintain_ubuntu24/software/bootstrap/bootstrap.sh) ``` Follow the onscreen directions. When the initial installation is complete, the system will reboot. @@ -51,7 +51,7 @@ This is a good time to: When the machine boots, you should see an icon that says `Ventilator update` on the desktop. Either double-click or use the touch screen to run this shortcut. This will build the graphical interface and controller software, and deploy the latter to the STM32. -**NOTE:** You may also want to check that audio is set to be piped to `HDMI` rather than the `AV Jack` by right clicking on the volume icon in the task bar. +**NOTE:** You may also want to check that audio is set to be piped to `HDMI` rather than the `AV Jack` by right-clicking on the volume icon in the task bar. ## What you have available diff --git a/software/utils/rpi_config/bootstrap.sh b/software/bootstrap/bootstrap.sh similarity index 87% rename from software/utils/rpi_config/bootstrap.sh rename to software/bootstrap/bootstrap.sh index cfc1157f3..a5112a3f2 100755 --- a/software/utils/rpi_config/bootstrap.sh +++ b/software/bootstrap/bootstrap.sh @@ -24,11 +24,10 @@ if [ -n "$VERBOSE" ]; then fi EXIT_FAILURE=1 -EXIT_SUCCESS=0 # Check if Linux PLATFORM="$(uname -s)" -if [ $PLATFORM != "Linux" ]; then +if [ "$PLATFORM" != "Linux" ]; then echo "Error: This script only supports 'Linux'. You have $PLATFORM." exit $EXIT_FAILURE fi @@ -56,7 +55,7 @@ if [ -z "$VERBOSE" ]; then echo " THIS WILL MESS WITH YOUR SYSTEM CONFIGURATION." echo " THIS IS FOR RASPBERRY-PI ONLY!" echo " " - read -n1 -s -r -p $'Press any key to continue...\n' key + read -n1 -s -r -p $'Press any key to continue...\n' _ fi ### Install git-lfs and update the system @@ -73,14 +72,14 @@ sudo raspi-config nonint do_blanking 1 # disable screen blanking sudo raspi-config nonint do_boot_splash 1 # disable splash screen ### Clone repository without LFS and go in -cd ${HOME} +cd "${HOME}" GIT_LFS_SKIP_SMUDGE=1 git clone https://github.com/RespiraWorks/Ventilator.git ventilator cd ventilator ############################################################################### ### TODO: Uncomment this section only when tweaking this script in a branch ### ############################################################################### -#git checkout issue_1277_deploy_with_graphics +git checkout maintain_ubuntu24 ############################################################################### ### TODO: Comment out above before merging to master!!! ### ############################################################################### @@ -89,24 +88,24 @@ cd ventilator git lfs pull -I "software/**" ### Desktop shortcuts -/bin/cp -rf software/utils/rpi_config/user/Desktop/* ${HOME}/Desktop +/bin/cp -rf software/bootstrap/user/Desktop/* "${HOME}/Desktop" ### On-screen keyboard, in case its needed -sudo cp -f software/utils/rpi_config/keyboard.xml /usr/share/matchbox-keyboard/ +sudo cp -f software/bootstrap/keyboard.xml /usr/share/matchbox-keyboard/ ### Execute desktop shortcuts without bitching -mkdir -p ${HOME}/.config/libfm && cp -f software/utils/rpi_config/user/.config/libfm.conf ${HOME}/.config/libfm +mkdir -p "${HOME}/.config/libfm" && cp -f software/bootstrap/user/.config/libfm.conf "${HOME}/.config/libfm" # Install dependencies and do initial configuration for build toolchains ./software/gui/gui.sh install -./software/controller/controller.sh install +./software/common/common.sh install ./software/controller/controller.sh configure if [ -z "$VERBOSE" ]; then echo "Installation complete. Please check that this terminated with no errors." echo "Upon restart, please run the 'Update' app from your desktop to complete deployment." echo " " - read -n1 -s -r -p $'Press any key to restart the machine\n' key + read -n1 -s -r -p $'Press any key to restart the machine\n' _ sudo shutdown -r now fi diff --git a/software/utils/rpi_config/desktop_background.jpg b/software/bootstrap/desktop_background.jpg similarity index 100% rename from software/utils/rpi_config/desktop_background.jpg rename to software/bootstrap/desktop_background.jpg diff --git a/software/utils/icons/rw_debug.png b/software/bootstrap/icons/rw_debug.png similarity index 100% rename from software/utils/icons/rw_debug.png rename to software/bootstrap/icons/rw_debug.png diff --git a/software/utils/icons/rw_inhale.png b/software/bootstrap/icons/rw_inhale.png similarity index 100% rename from software/utils/icons/rw_inhale.png rename to software/bootstrap/icons/rw_inhale.png diff --git a/software/utils/icons/rw_logo.png b/software/bootstrap/icons/rw_logo.png similarity index 100% rename from software/utils/icons/rw_logo.png rename to software/bootstrap/icons/rw_logo.png diff --git a/software/utils/icons/rw_logo_reverse.png b/software/bootstrap/icons/rw_logo_reverse.png similarity index 100% rename from software/utils/icons/rw_logo_reverse.png rename to software/bootstrap/icons/rw_logo_reverse.png diff --git a/software/utils/icons/rw_logo_transparent.png b/software/bootstrap/icons/rw_logo_transparent.png similarity index 100% rename from software/utils/icons/rw_logo_transparent.png rename to software/bootstrap/icons/rw_logo_transparent.png diff --git a/software/utils/rpi_config/keyboard.xml b/software/bootstrap/keyboard.xml similarity index 100% rename from software/utils/rpi_config/keyboard.xml rename to software/bootstrap/keyboard.xml diff --git a/software/utils/rpi_config/update.sh b/software/bootstrap/update.sh similarity index 69% rename from software/utils/rpi_config/update.sh rename to software/bootstrap/update.sh index 85dd0b474..a0a5a6e5f 100755 --- a/software/utils/rpi_config/update.sh +++ b/software/bootstrap/update.sh @@ -14,31 +14,13 @@ # See the License for the specific language governing permissions and # limitations under the License. +# This script should work no matter where you call it from. +pushd "$(dirname "$0")" > /dev/null || exit_fail -# Fail if any command fails -set -e -set -o pipefail +. ../common/base.sh -# Print each command as it executes -if [ -n "$VERBOSE" ]; then - set -o xtrace -fi - -EXIT_FAILURE=1 -EXIT_SUCCESS=0 - -# Check if Linux -PLATFORM="$(uname -s)" -if [ $PLATFORM != "Linux" ]; then - echo "Error: This script only supports 'Linux'. You have $PLATFORM." - exit $EXIT_FAILURE -fi - -# Make sure we are not in sudo -if [ "$EUID" -eq 0 ] && [ "$2" != "-f" ]; then - echo "Please do not run this script with root privileges!" - exit $EXIT_FAILURE -fi +ensure_linux +ensure_not_root message="RespiraWorks Ventilator update utility @@ -58,27 +40,28 @@ if zenity --question --no-wrap --title="Ventilator update" \ then echo "Continuing with update..." else - exit $EXIT_FAILURE + exit_fail fi # This script should run from repo/software dir -cd "$(dirname "$0")"/../.. +pushd ../.. || exit_fail ### Will not switch branch to master! git pull ### Set RW background - must be done in Desktop mode, thus not in boostrap.sh -pcmanfm --set-wallpaper ${HOME}/ventilator/software/utils/rpi_config/desktop_background.jpg +pcmanfm --set-wallpaper "${HOME}/ventilator/software/bootstrap/desktop_background.jpg" ### Update Desktop shortcuts -/bin/cp -rf ${HOME}/ventilator/software/utils/rpi_config/user/Desktop/* ${HOME}/Desktop +/bin/cp -rf software/bootstrap/user/Desktop/* "${HOME}/Desktop" if zenity --question --no-wrap --title="PIO Update" \ --text "Update PlatformIO and libraries?" then ### Clean and update PIO echo "Updating PlatformIO and libraries..." - ./controller/controller.sh update + ./software/common/common.sh update + ./software/controller/controller.sh patch-ocd fi if zenity --question --no-wrap --title="Controller Build" \ @@ -86,8 +69,8 @@ if zenity --question --no-wrap --title="Controller Build" \ then echo "Building and deploying cycle controller..." ### Update controller and deploy - ./controller/controller.sh clean - ./controller/controller.sh run + ./software/controller/controller.sh clean + ./software/controller/controller.sh run fi ans=$(zenity --list --radiolist --title "GUI Build" \ @@ -97,14 +80,13 @@ ans=$(zenity --list --radiolist --title "GUI Build" \ if [[ $ans = "Release" ]] then echo "Building Release" - ./gui/gui.sh clean - ./gui/gui.sh build --release --no-checks; + ./software/gui/gui.sh clean + ./software/gui/gui.sh build --release --no-checks; elif [[ $ans = "Debug" ]] then echo "Building Debug" - ./gui/gui.sh clean - ./gui/gui.sh build --debug --no-checks + ./software/gui/gui.sh clean + ./software/gui/gui.sh build --debug --no-checks fi zenity --info --no-wrap --title="Success" --text "Ventilator update executed successfully!" -exit $EXIT_SUCCESS diff --git a/software/utils/rpi_config/user/.config/libfm.conf b/software/bootstrap/user/.config/libfm.conf similarity index 100% rename from software/utils/rpi_config/user/.config/libfm.conf rename to software/bootstrap/user/.config/libfm.conf diff --git a/software/bootstrap/user/Desktop/.gitignore b/software/bootstrap/user/Desktop/.gitignore new file mode 100644 index 000000000..3f7ac9cf7 --- /dev/null +++ b/software/bootstrap/user/Desktop/.gitignore @@ -0,0 +1 @@ +!*.desktop diff --git a/software/utils/rpi_config/user/Desktop/Github b/software/bootstrap/user/Desktop/Github similarity index 66% rename from software/utils/rpi_config/user/Desktop/Github rename to software/bootstrap/user/Desktop/Github index 17360eb2e..0ecbed058 100755 --- a/software/utils/rpi_config/user/Desktop/Github +++ b/software/bootstrap/user/Desktop/Github @@ -2,5 +2,5 @@ Type=Link Name=Github repo Comment=RespiraWorks ventilator repository on Github -Icon=/home/admin/ventilator/software/utils/icons/rw_logo_reverse.png +Icon=/home/admin/ventilator/software/bootstrap/icons/rw_logo_reverse.png URL=https://github.com/RespiraWorks/Ventilator diff --git a/software/utils/rpi_config/user/Desktop/vent-debug.desktop b/software/bootstrap/user/Desktop/vent-debug.desktop similarity index 68% rename from software/utils/rpi_config/user/Desktop/vent-debug.desktop rename to software/bootstrap/user/Desktop/vent-debug.desktop index fb15bc7e2..10a14c972 100755 --- a/software/utils/rpi_config/user/Desktop/vent-debug.desktop +++ b/software/bootstrap/user/Desktop/vent-debug.desktop @@ -1,8 +1,8 @@ [Desktop Entry] Name=Debug -Path=/home/admin/ventilator/software/utils +Path=/home/admin/ventilator/software/tools Exec=lxterminal -t "Vent debug" --working-directory=/home/admin/ventilator/software/controller -e "source ~/.profile && ./controller.sh debug" -Icon=/home/admin/ventilator/software/utils/icons/rw_debug.png +Icon=/home/admin/ventilator/software/bootstrap/icons/rw_debug.png Encoding=UTF-8 Terminal=false Type=Application diff --git a/software/utils/rpi_config/user/Desktop/vent-demo.desktop b/software/bootstrap/user/Desktop/vent-demo.desktop similarity index 75% rename from software/utils/rpi_config/user/Desktop/vent-demo.desktop rename to software/bootstrap/user/Desktop/vent-demo.desktop index 4e3ae949e..977cbc181 100755 --- a/software/utils/rpi_config/user/Desktop/vent-demo.desktop +++ b/software/bootstrap/user/Desktop/vent-demo.desktop @@ -2,7 +2,7 @@ Name=GUI Demo Path=/home/admin/ventilator/software/gui Exec=lxterminal -t "Ventilator GUI" --working-directory=/home/admin/ventilator/software/gui -e "./gui.sh run" -Icon=/home/admin/ventilator/software/utils/icons/rw_logo_transparent.png +Icon=/home/admin/ventilator/software/bootstrap/icons/rw_logo_transparent.png Terminal=true Type=Application Categories=Application diff --git a/software/utils/rpi_config/user/Desktop/vent-gui.desktop b/software/bootstrap/user/Desktop/vent-gui.desktop similarity index 77% rename from software/utils/rpi_config/user/Desktop/vent-gui.desktop rename to software/bootstrap/user/Desktop/vent-gui.desktop index 37242619e..38947f2f7 100755 --- a/software/utils/rpi_config/user/Desktop/vent-gui.desktop +++ b/software/bootstrap/user/Desktop/vent-gui.desktop @@ -2,7 +2,7 @@ Name=Ventilator GUI Path=/home/admin/ventilator/software/gui Exec=lxterminal -t "Ventilator GUI" --working-directory=/home/admin/ventilator/software/gui -e "./gui.sh run --serial-port /dev/ttyS0" -Icon=/home/admin/ventilator/software/utils/icons/rw_logo_transparent.png +Icon=/home/admin/ventilator/software/bootstrap/icons/rw_logo_transparent.png Terminal=true Type=Application Categories=Application diff --git a/software/bootstrap/user/Desktop/vent-update.desktop b/software/bootstrap/user/Desktop/vent-update.desktop new file mode 100755 index 000000000..f52b15df7 --- /dev/null +++ b/software/bootstrap/user/Desktop/vent-update.desktop @@ -0,0 +1,8 @@ +[Desktop Entry] +Name=Update +Path=/home/admin/ventilator/software/bootstrap +Exec=lxterminal -t "Ventilator update" --working-directory=/home/admin/ventilator/software/bootstrap -e "source ~/.profile && ./update.sh" +Icon=/home/admin/ventilator/software/bootstrap/icons/rw_inhale.png +Terminal=true +Type=Application +Categories=Application diff --git a/software/common/.gitignore b/software/common/.gitignore new file mode 100644 index 000000000..d891eccad --- /dev/null +++ b/software/common/.gitignore @@ -0,0 +1,5 @@ +#network protocol output files +generated_libs/protocols/*.c +generated_libs/protocols/*.h +.pio/ +coverage_reports/ diff --git a/software/common/base.sh b/software/common/base.sh new file mode 100755 index 000000000..5e0f3a9da --- /dev/null +++ b/software/common/base.sh @@ -0,0 +1,125 @@ +#!/bin/bash + +# Copyright 2024, RespiraWorks +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. + + +# \todo: keep PIO_VERSION updated, test thoroughly whenever you do, leave this "todo" here +PIO_VERSION=6.1.16 + +# \todo: keep CONAN_VERSION updated, test thoroughly whenever you do, leave this "todo" here +CONAN_VERSION=2.2.3 + +EXIT_FAILURE=1 +EXIT_SUCCESS=0 + +PLATFORM="$(uname -s)" + +# Fail if any command fails +set -e +set -o pipefail + +# Print each command as it executes +if [ -n "$VERBOSE" ]; then + set -o xtrace +fi + +function exit_fail() { + exit "$EXIT_FAILURE" +} + +function exit_good() { + exit "$EXIT_SUCCESS" +} + +function ensure_linux() { + # Check if Linux + if [ "$PLATFORM" != "Linux" ]; then + echo "Error: This script only supports 'Linux'. You have $PLATFORM." + exit_fail + fi +} + +function pushd() { + # Silent pushd + command pushd "$@" > /dev/null +} + +function popd() { + # Silent popd + command popd > /dev/null +} + +function ensure_not_root() { + if [ "$EUID" -eq 0 ] && [ -z "$FORCED_ROOT" ]; then + echo "Please do not run update with root privileges!" + exit_fail + fi +} + +function clean_dir() { + dir_name=$1 + if [ -d "$dir_name" ]; then + echo "Removing $dir_name" + rm -rf "$dir_name" + return "$EXIT_SUCCESS" + elif [ -f "$dir_name" ]; then + echo "File with this name already exists, not a directory." + return "$EXIT_FAILURE" + fi +} + +function create_clean_dir() { + dir_name=$1 + clean_dir "$dir_name" + if mkdir "$dir_name"; then + echo "Clean directory created: $dir_name" + return "$EXIT_SUCCESS" + else + echo "Creating directory failed: $dir_name" + return "$EXIT_FAILURE" + fi +} + +function install_py() { + sudo apt update + sudo apt install -y \ + python-is-python3 \ + python3-pip \ + pipx + pipx ensurepath + pipx install --force poetry + source "${HOME}/.profile" +} + +function install_common_tooling() { + install_py + sudo apt update + sudo apt install -y \ + build-essential \ + clang-tidy \ + cppcheck \ + curl \ + gcovr \ + git \ + lcov \ + libtinfo6 \ + protobuf-compiler + pipx install --force nanopb + pipx install --force platformio==${PIO_VERSION} +} + +function launch_browser() { + python3 -m webbrowser "${1}" +} diff --git a/software/common/common.sh b/software/common/common.sh index ee56e64f3..d63a19f05 100755 --- a/software/common/common.sh +++ b/software/common/common.sh @@ -26,120 +26,62 @@ # CircleCI runs this script (via .circleci/config.yml), but might have some # environment differences, so the approximation is not perfect. For -# \todo: keep PIO_VERSION updated, test thoroughly whenever you do, leave this "todo" here -PIO_VERSION=6.1.6 -COVERAGE_ENVIRONMENT=native -COVERAGE_OUTPUT_DIR=coverage_reports - -# a more exact test run, please build the tests_Dockerfile. - -# Fail if any command fails -set -e -set -o pipefail - -# Print each command as it executes -if [ -n "$VERBOSE" ]; then - set -o xtrace -fi - # This script should work no matter where you call it from. cd "$(dirname "$0")" -EXIT_FAILURE=1 -EXIT_SUCCESS=0 +. ./base.sh -# Check if Linux -PLATFORM="$(uname -s)" -if [ $PLATFORM != "Linux" ]; then - echo "Error: This script only supports 'Linux'. You have $PLATFORM." - exit $EXIT_FAILURE -fi +ensure_linux -######### -# UTILS # -######### +COVERAGE_ENVIRONMENT=native +COVERAGE_OUTPUT_DIR=coverage_reports print_help() { cat < - run specific unit test, may include wildcards, i.e. '*checksum*' [-o] - open coverage report in browser when done - help/-h Display this help info + help/-h Display this help info EOF } -clean_dir() { - dir_name=$1 - if [ -d "$dir_name" ]; then - echo "Removing $dir_name" - rm -rf "$dir_name" - return 0 - elif [ -f "$dir_name" ]; then - echo "File with this name already exists, not a directory." - return 1 - fi -} - clean_all() { clean_dir .pio clean_dir ${COVERAGE_OUTPUT_DIR} } -install_linux() { - sudo apt-get update - sudo apt-get install -y \ - build-essential \ - python3-pip \ - git \ - curl \ - libtinfo5 \ - cppcheck \ - gcovr \ - lcov \ - clang-tidy \ - protobuf-compiler - pip3 install -U pip - pip3 install nanopb - pip3 install setuptools - pip3 install platformio==${PIO_VERSION} - source ${HOME}/.profile -} - update_platformio() { - python3 -m pip install --upgrade pip - pip3 install platformio==${PIO_VERSION} + pipx install --force platformio=="${PIO_VERSION}" pio pkg uninstall -d . pio pkg install -d . - exit $EXIT_SUCCESS } generate_network_protocols() { PROTOCOLS_DIR=generated_libs/protocols - PYTHON_LIB_PATH=../utils/debug/protocols + PYTHON_LIB_PATH=../tools/protocols GUI_LIB_PATH=../gui/src/protocols - NANOPB_PATH=$(pip3 show nanopb | awk '{ if($1 == "Location:") print $2}')/nanopb/generator + NANOPB_PLUGIN=${HOME}/.local/bin/protoc-gen-nanopb # ensure paths exist mkdir -p "$PYTHON_LIB_PATH" mkdir -p "$GUI_LIB_PATH" #ensure old files are gone - rm -f $PROTOCOLS_DIR/*.h $PROTOCOLS_DIR/*.c $GUI_LIB_PATH/*.c* $GUI_LIB_PATH/*.h* $PYTHON_LIB_PATH/*.py + rm -f $PROTOCOLS_DIR/*.h $PROTOCOLS_DIR/*.c $GUI_LIB_PATH/*.c* $GUI_LIB_PATH/*.h* $PYTHON_LIB_PATH/*_pb2.py protoc \ - --plugin=$NANOPB_PATH/protoc-gen-nanopb \ - -I $NANOPB_PATH/proto \ + --plugin="$NANOPB_PLUGIN" \ -I $PROTOCOLS_DIR \ --nanopb_out=$PROTOCOLS_DIR \ --cpp_out=$GUI_LIB_PATH \ @@ -202,12 +144,14 @@ generate_coverage_reports() { # cannot use --exclude as v1.13 on CI doesn't support that param lcov ${QUIET} --directory "$SRC_DIR" --capture \ - --output-file "${COVERAGE_OUTPUT_DIR}/coverage.info" + --output-file "${COVERAGE_OUTPUT_DIR}/coverage.info" \ + --ignore-errors mismatch # the file "output_export.cpp" causes an lcov error, # but it doesn't appear to be part of our source, so we're excluding it lcov ${QUIET} --remove "${COVERAGE_OUTPUT_DIR}/coverage.info" \ --output-file "${COVERAGE_OUTPUT_DIR}/coverage_trimmed.info" \ + --ignore-errors unused \ "*_test_transport.c" \ "*/protocols/*" \ "*output_export.c*" \ @@ -227,46 +171,35 @@ generate_coverage_reports() { } -launch_browser() { - python3 -m webbrowser "${COVERAGE_OUTPUT_DIR}/index.html" -} - ######## # HELP # ######## - if [ "$1" == "help" ] || [ "$1" == "-h" ]; then print_help - exit $EXIT_SUCCESS + exit_good ########### # INSTALL # ########### elif [ "$1" == "install" ]; then - if [ "$EUID" -eq 0 ] && [ -z "$FORCED_ROOT" ]; then - echo "Please do not run install with root privileges!" - exit $EXIT_FAILURE - fi - install_linux - exit $EXIT_SUCCESS + ensure_not_root + install_common_tooling + exit_good ########## # UPDATE # ########## elif [ "$1" == "update" ]; then - if [ "$EUID" -eq 0 ] && [ -z "$FORCED_ROOT" ]; then - echo "Please do not run update with root privileges!" - exit $EXIT_SUCCESS - fi + ensure_not_root update_platformio - exit $EXIT_SUCCESS + exit_good ######### # CLEAN # ######### elif [ "$1" == "clean" ]; then clean_all - exit $EXIT_SUCCESS + exit_good ######### # CHECK # @@ -274,7 +207,7 @@ elif [ "$1" == "clean" ]; then elif [ "$1" == "check" ]; then generate_network_protocols run_checks - exit $EXIT_SUCCESS + exit_good ############# # UNIT TEST # @@ -292,10 +225,10 @@ elif [ "$1" == "unit" ]; then generate_coverage_reports if [ "$2" == "-o" ] || [ "$3" == "-o" ]; then - launch_browser + launch_browser "${COVERAGE_OUTPUT_DIR}/index.html" fi - exit $EXIT_SUCCESS + exit_good ############ # TEST ALL # @@ -323,22 +256,21 @@ elif [ "$1" == "test" ]; then echo "Skipping static checks." fi - exit $EXIT_SUCCESS + exit_good #################### # CLEANUP COVERAGE # #################### -elif [ "$1" == "cov_cleanup" ]; then +elif [ "$1" == "cov-cleanup" ]; then cleanup_coverage_reports - exit $EXIT_SUCCESS + exit_good ############################## # GENERATE NETWORK PROTOCOLS # ############################## elif [ "$1" == "generate" ]; then generate_network_protocols - - exit $EXIT_SUCCESS + exit_good ################ # ERROR & HELP # @@ -347,5 +279,5 @@ else echo "ERROR: Bad command or insufficient parameters!" echo print_help - exit $EXIT_FAILURE + exit_fail fi diff --git a/software/common/platformio.ini b/software/common/platformio.ini index 636928a4e..8bea4da01 100644 --- a/software/common/platformio.ini +++ b/software/common/platformio.ini @@ -62,8 +62,8 @@ check_flags = cppcheck: --enable=all --std=c++17 --suppress=missingIncludeSystem --suppress=unmatchedSuppression --suppress=unusedFunction ; The actual checks are defined in .clang-tidy. clangtidy: --checks='-*' --extra-arg-before=-xc++ --extra-arg-before=-std=c++17 --extra-arg-before=-Wno-pragma-once-outside-header -check_patterns = - libs +check_src_filters = + + ; Do not include test_libs ; Do not include generated_libs diff --git a/software/controller/.gitignore b/software/controller/.gitignore new file mode 100644 index 000000000..29b0d215b --- /dev/null +++ b/software/controller/.gitignore @@ -0,0 +1,2 @@ +.pio/ +coverage_reports/ diff --git a/software/controller/README.md b/software/controller/README.md index 584a95f87..ff918dce4 100644 --- a/software/controller/README.md +++ b/software/controller/README.md @@ -4,7 +4,7 @@ Here resides the code for the ventilator controller. Please also see the [Software design pages](../design/controller_architecture.md) for more information on controller architecture. -If you are not actively working on the controller code but simply need it for prototype testing, you will probably want to use the [automated deployment scripts](../utils/rpi_config). +If you are not actively working on the controller code but simply need it for prototype testing, you will probably want to use the [automated deployment scripts](../bootstrap). ## Rationale and structure @@ -29,7 +29,7 @@ The controller shares the [common code](../common) with the GUI. The part of the * building and uploading/deployment of controller firmware * running unit tests, static checks, integration tests * generating test coverage reports locally - * shortcut to [debug interface](../utils/debug) + * shortcut to [debug interface](../tools) * self-documented if you run it without parameters or with `--help` * [platfomio.ini](platformio.ini) - the equivalent of a "make file" which governs how platformio builds targets * [.ycm_extra_conf.py](.ycm_extra_conf.py) - configuration for [YouCompleteMe](https://github.com/ycm-core/YouCompleteMe) (for some IDEs) @@ -102,7 +102,7 @@ If this is the only device connected, you can deploy with ``` If you have multiple devices connected to your development machine, you should: -* run `./controller.sh patch_ocd` to patch ST-Link scripts +* run `./controller.sh patch-ocd` to patch ST-Link scripts * add your devices to manifest spreadsheet on Google Drive in [this directory](https://drive.google.com/drive/folders/1EBQReayx557hWeHTPxkbUI4eeUq-1AWw?usp=sharing) (you will need team write access). * run `./controller.sh debug -c "device update"` which will fetch you a copy of that manifest diff --git a/software/controller/controller.sh b/software/controller/controller.sh index 942b5abdc..c816b2829 100755 --- a/software/controller/controller.sh +++ b/software/controller/controller.sh @@ -32,57 +32,24 @@ # - They have to have a very good chance of passing for other # developers if they run via ./controller.sh test -# \todo: keep PIO_VERSION updated, test thoroughly whenever you do, leave this "todo" here -PIO_VERSION=6.1.6 -COVERAGE_ENVIRONMENT=native -COVERAGE_OUTPUT_DIR=coverage_reports - -# Fail if any command fails -set -e -set -o pipefail - -# Print each command as it executes -if [ -n "$VERBOSE" ]; then - set -o xtrace -fi - # This script should work no matter where you call it from. cd "$(dirname "$0")" -EXIT_FAILURE=1 -EXIT_SUCCESS=0 - -# Check if Linux -PLATFORM="$(uname -s)" -if [ $PLATFORM != "Linux" ]; then - echo "Error: This script only supports 'Linux'. You have $PLATFORM." - exit $EXIT_FAILURE -fi +. ../common/base.sh -# Silent pushd -pushd () { - command pushd "$@" > /dev/null -} +ensure_linux -# Silent popd -popd () { - command popd > /dev/null -} - -######### -# UTILS # -######### +COVERAGE_ENVIRONMENT=native +COVERAGE_OUTPUT_DIR=coverage_reports print_help() { cat < [parameters...] - run specific integration test with parameters - cov_cleanup Prepare coverage reports for uploading to server + cov-cleanup Prepare coverage reports for uploading to server help/-h Display this help info Additionally, the following environment variables may be evaluated: @@ -106,29 +73,11 @@ Additionally, the following environment variables may be evaluated: EOF } -clean_dir() { - dir_name=$1 - if [ -d "$dir_name" ]; then - echo "Removing $dir_name" - rm -rf "$dir_name" - return 0 - elif [ -f "$dir_name" ]; then - echo "File with this name already exists, not a directory." - return 1 - fi -} - clean_all() { clean_dir .pio clean_dir ${COVERAGE_OUTPUT_DIR} } -install_linux() { - pip3 install pyserial matplotlib pandas gitpython numpy pytest - pip3 install platformio==${PIO_VERSION} - source ${HOME}/.profile -} - configure_platformio() { echo 'ATTRS{idVendor}=="0483", ATTRS{idProduct}=="374b", MODE="666"' | sudo tee /etc/udev/rules.d/99-openocd.rules > /dev/null curl -fsSL https://raw.githubusercontent.com/platformio/platformio-core/develop/platformio/assets/system/99-platformio-udev.rules | sudo tee /etc/udev/rules.d/99-platformio-udev.rules @@ -139,16 +88,8 @@ configure_platformio() { echo "Updated udev rules. You might have to restart your machine for changes to become effective." } -update_platformio() { - python3 -m pip install --upgrade pip - pip3 install platformio==${PIO_VERSION} - pio pkg uninstall -d . - pio pkg install -d . - exit $EXIT_SUCCESS -} - patch_ocd_stlink() { - cp -fr platformio/stlink.cfg ${HOME}/.platformio/packages/tool-openocd/scripts/interface + cp -fr platformio/stlink.cfg "${HOME}/.platformio/packages/tool-openocd/openocd/scripts/interface" } run_checks() { @@ -211,13 +152,16 @@ generate_coverage_reports() { # cannot use --exclude as v1.13 on CI doesn't support that param lcov ${QUIET} --directory "$SRC_DIR" --capture \ - --output-file "${COVERAGE_OUTPUT_DIR}/coverage.info" + --output-file "${COVERAGE_OUTPUT_DIR}/coverage.info" \ + --ignore-errors mismatch # the file "output_export.cpp" causes an lcov error, # but it doesn't appear to be part of our source, so we're excluding it - lcov ${QUIET} --remove "${COVERAGE_OUTPUT_DIR}/coverage.info" \ + lcov ${QUIET} --remove "${COVERAGE_OUTPUT_DIR}/coverage.info" \ --output-file "${COVERAGE_OUTPUT_DIR}/coverage_trimmed.info" \ + --ignore-errors unused \ "*_test_transport.c" \ + "*/protocols/*" \ "*output_export.c*" \ "*common*" \ "*test*" \ @@ -236,16 +180,16 @@ generate_coverage_reports() { } -launch_browser() { - python3 -m webbrowser "${COVERAGE_OUTPUT_DIR}/index.html" +function run_debug() { + ../tools/debug.sh "$@" } # prints info from device manifest, if SN is defined in environment print_device_info() { - if [ ! -z "$SN" ] + if [ -n "$SN" ] then echo "SN has been defined in environment, will be deploying to the following device:" - ../utils/debug/debug.sh -c "device find $SN" + run_debug -c "device find $SN" fi } @@ -253,7 +197,7 @@ print_device_info() { # prints ST-Link serial number by defined alias get_hla_serial() { device_alias="$1" - ../utils/debug/debug.sh -c "device find $device_alias h" + run_debug -c "device find $device_alias h" } # build @@ -270,7 +214,7 @@ build() { deploy() { env_name="$1" - if [ ! -z "$SN" ] + if [ -n "$SN" ] then echo "CUSTOM_HLA_SERIAL=$(get_hla_serial ${SN}) $(build ${env_name}) -t upload" else @@ -353,58 +297,31 @@ run_all_integration_tests() { ######## # HELP # ######## - if [ "$1" == "help" ] || [ "$1" == "-h" ]; then print_help - exit $EXIT_SUCCESS - -########### -# INSTALL # -########### -elif [ "$1" == "install" ]; then - ../common/common.sh install - if [ "$EUID" -eq 0 ] && [ -z "$FORCED_ROOT" ]; then - echo "Please do not run install with root privileges!" - exit $EXIT_FAILURE - fi - install_linux - exit $EXIT_SUCCESS + exit_good ############# # CONFIGURE # ############# elif [ "$1" == "configure" ]; then - if [ "$EUID" -eq 0 ] && [ -z "$FORCED_ROOT" ]; then - echo "Please do not run configure with root privileges!" - exit $EXIT_FAILURE - fi + ensure_not_root configure_platformio - exit $EXIT_SUCCESS - -########## -# UPDATE # -########## -elif [ "$1" == "update" ]; then - if [ "$EUID" -eq 0 ] && [ -z "$FORCED_ROOT" ]; then - echo "Please do not run update with root privileges!" - exit $EXIT_SUCCESS - fi - update_platformio - exit $EXIT_SUCCESS + exit_good ######### # CLEAN # ######### elif [ "$1" == "clean" ]; then clean_all - exit $EXIT_SUCCESS + exit_good ######### # CHECK # ######### elif [ "$1" == "check" ]; then run_checks - exit $EXIT_SUCCESS + exit_good ############# # UNIT TEST # @@ -412,6 +329,9 @@ elif [ "$1" == "check" ]; then elif [ "$1" == "unit" ]; then clean_all + # generate comms protocols + ../common/common.sh generate + if [ -n "$2" ]; then pio test -e native -f "$2" else @@ -421,10 +341,10 @@ elif [ "$1" == "unit" ]; then generate_coverage_reports if [ "$2" == "-o" ] || [ "$3" == "-o" ]; then - launch_browser + launch_browser "${COVERAGE_OUTPUT_DIR}/index.html" fi - exit $EXIT_SUCCESS + exit_good ############ # TEST ALL # @@ -464,24 +384,21 @@ elif [ "$1" == "test" ]; then echo "Skipping static checks." fi - exit $EXIT_SUCCESS + exit_good #################### # CLEANUP COVERAGE # #################### -elif [ "$1" == "cov_cleanup" ]; then +elif [ "$1" == "cov-cleanup" ]; then cleanup_coverage_reports - exit $EXIT_SUCCESS + exit_good ####### # RUN # ####### elif [ "$1" == "run" ]; then - if [ "$EUID" -eq 0 ] && [ -z "$FORCED_ROOT" ]; then - echo "Please do not deploy with root privileges!" - exit $EXIT_FAILURE - fi + ensure_not_root # generate comms protocols ../common/common.sh generate @@ -489,27 +406,27 @@ elif [ "$1" == "run" ]; then print_device_info eval "$(deploy stm32)" - exit $EXIT_SUCCESS + exit_good ######### # DEBUG # ######### elif [ "$1" == "debug" ]; then shift - if [ ! -z "$SN" ] + if [ -n "$SN" ] then - ../utils/debug/debug.sh -d $SN "$@" + run_debug -d "$SN" "$@" else - ../utils/debug/debug.sh "$@" + run_debug "$@" fi - exit $EXIT_SUCCESS + exit_good ############# # PATCH OCD # ############# elif [ "$1" == "patch-ocd" ]; then patch_ocd_stlink - exit $EXIT_SUCCESS + exit_good ############# # INTEGRATE # @@ -520,20 +437,20 @@ elif [ "$1" == "integrate" ]; then then if [ -z "$3" ]; then echo "No delay time provided" - exit $EXIT_FAILURE + exit_fail fi run_all_integration_tests "$3" else deploy_integration_test "${@:2}" fi - exit $EXIT_SUCCESS + exit_good ########### # DEVICES # ########### elif [ "$1" == "devices" ]; then - ../utils/debug/debug.sh -c "device list" - exit $EXIT_SUCCESS + run_debug -c "device list" + exit_good ################ # ERROR & HELP # @@ -542,5 +459,5 @@ else echo "ERROR: Bad command or insufficient parameters!" echo print_help - exit $EXIT_FAILURE + exit_fail fi diff --git a/software/controller/lib/debug/README.md b/software/controller/lib/debug/README.md index 4666b3572..b4a288e53 100644 --- a/software/controller/lib/debug/README.md +++ b/software/controller/lib/debug/README.md @@ -7,7 +7,7 @@ production system. **#TODO** How? The Python CLI interface can be accessed via the common controller utilities script at [software/controller/controller.sh](../../controller.sh) -There is also a [brief tutorial](../../../utils/debug) on how to use it. +There is also a [brief tutorial](../../../tools) on how to use it. ## Controller side architecture [![Debug Interface Architecture diagram](images/architecture.png)](https://docs.google.com/drawings/d/18oN96yqyU3Ky_Kb82zGym1iXULxy9IW3KtIfMk-IDdI/edit?usp=sharing) diff --git a/software/controller/platformio.ini b/software/controller/platformio.ini index 31ee0808b..75fb2f0e8 100644 --- a/software/controller/platformio.ini +++ b/software/controller/platformio.ini @@ -75,16 +75,16 @@ check_flags = cppcheck: --enable=all --std=c++17 --suppress=missingIncludeSystem --suppress=unmatchedSuppression --suppress=unusedFunction --suppress=unusedStructMember ; The actual checks are defined in .clang-tidy. clangtidy: --checks='*' --extra-arg-before=-xc++ --extra-arg-before=-std=c++17 --extra-arg-before=-Wno-pragma-once-outside-header -check_patterns = - ../controller/lib - ../controller/src - ../controller/integration_tests +check_src_filters = + + + + + + ; ../common/libs checked as part of common ; Do not include ../common/test_libs ; Do not include ../common/generated_libs [env:stm32] -platform = ststm32@15.4.1 +platform = ststm32@17.6.0 board = custom_stm32 build_flags = ${env.build_flags} @@ -98,7 +98,7 @@ build_src_filter = + lib_deps = nanopb/Nanopb@^0.4.7 [env:integration-test] -platform = ststm32@15.4.1 +platform = ststm32@17.6.0 board = custom_stm32 build_flags = ${env.build_flags} diff --git a/software/controller/platformio/README.md b/software/controller/platformio/README.md index 2492e6b7b..5fb527c23 100644 --- a/software/controller/platformio/README.md +++ b/software/controller/platformio/README.md @@ -10,7 +10,7 @@ In order to deploy to multiple STM32 devices on the same system, a file in your `$HOME/.platformio/packages/tool-openocd/scripts/interface/stlink.cfg` must be replaced with the [`stlink.cfg`](stlink.cfg) provided here. -This patching is now handled by running `controller.sh patch_ocd`. +This patching is now handled by running `controller.sh patch-ocd`. This solution is based on a post on the platformio forums [here](https://community.platformio.org/t/choosing-stlink-v2-programmer/10716). diff --git a/software/controller/platformio/stlink.cfg b/software/controller/platformio/stlink.cfg index 3f95bbca2..04f8834ac 100644 --- a/software/controller/platformio/stlink.cfg +++ b/software/controller/platformio/stlink.cfg @@ -1,19 +1,21 @@ +# SPDX-License-Identifier: GPL-2.0-or-later + # # STMicroelectronics ST-LINK/V1, ST-LINK/V2, ST-LINK/V2-1, STLINK-V3 in-circuit # debugger/programmer # -interface hla +adapter driver hla hla_layout stlink if { [info exists ::env(CUSTOM_HLA_SERIAL) ] } { - hla_serial "$env(CUSTOM_HLA_SERIAL)" + adapter serial "$env(CUSTOM_HLA_SERIAL)" } hla_device_desc "ST-LINK" -hla_vid_pid 0x0483 0x3744 0x0483 0x3748 0x0483 0x374b 0x0483 0x374d 0x0483 0x374e 0x0483 0x374f 0x0483 0x3752 0x0483 0x3753 +hla_vid_pid 0x0483 0x3744 0x0483 0x3748 0x0483 0x374b 0x0483 0x374d 0x0483 0x374e 0x0483 0x374f 0x0483 0x3752 0x0483 0x3753 0x0483 0x3754 # Optionally specify the serial number of ST-LINK/V2 usb device. ST-LINK/V2 # devices seem to have serial numbers with unreadable characters. ST-LINK/V2 # firmware version >= V2.J21.S4 recommended to avoid issues with adapter serial # number reset issues. # eg. -#hla_serial "\xaa\xbc\x6e\x06\x50\x75\xff\x55\x17\x42\x19\x3f" +# adapter serial "\xaa\xbc\x6e\x06\x50\x75\xff\x55\x17\x42\x19\x3f" diff --git a/software/gui/.gitignore b/software/gui/.gitignore new file mode 100644 index 000000000..1d106f4c0 --- /dev/null +++ b/software/gui/.gitignore @@ -0,0 +1,8 @@ +#network protocol output files +src/protocols/*.cc +src/protocols/*.h +build/ +coverage_reports/ + +#Conan created files +CMakeUserPresets.json diff --git a/software/gui/README.md b/software/gui/README.md index 57665b601..61b117ae7 100644 --- a/software/gui/README.md +++ b/software/gui/README.md @@ -18,7 +18,7 @@ To deploy it as intended for the ventilator you will need: A more complete list of hardware components is on the [Electronics sub-assembly page](../../manufacturing/internals/electronics). -If you are not actively working on the code for this application but simply need it for prototype testing, you will probably want to use the [automated deployment scripts](../utils/rpi_config). +If you are not actively working on the code for this application but simply need it for prototype testing, you will probably want to use the [automated deployment scripts](../bootstrap). ## Building the GUI diff --git a/software/gui/gui.sh b/software/gui/gui.sh index 0e817958c..2b2e77c5d 100755 --- a/software/gui/gui.sh +++ b/software/gui/gui.sh @@ -17,38 +17,16 @@ # This script is designed for local unix usage. # ./gui.sh --help -# \todo: keep CONAN_VERSION updated, test thoroughly whenever you do, leave this "todo" here -CONAN_VERSION=2.2.3 - -# Fail if any command fails -set -e -set -o pipefail - -# Print each command as it executes -if [ -n "$VERBOSE" ]; then - set -o xtrace -fi - # This script should work no matter where you call it from. cd "$(dirname "$0")" -EXIT_FAILURE=1 -EXIT_SUCCESS=0 +. ../common/base.sh -# Check if Darwin or Linux -PLATFORM="$(uname -s)" -if [ $PLATFORM != "Darwin" ] && [ $PLATFORM != "Linux" ]; then - echo "Error: This script only supports 'Darwin' or 'Linux'. You have $PLATFORM." - exit $EXIT_FAILURE -fi +ensure_linux COVERAGE_INPUT_DIR=build COVERAGE_OUTPUT_DIR=coverage_reports -######### -# UTILS # -######### - print_help() { cat < /dev/null +} + +# Silent popd +function popd() { + command popd > /dev/null +} + +# This script should work no matter where you call it from. +MY_PATH="$(dirname "$0")" + +pushd $MY_PATH + +poetry install +poetry run debug "${@:1}" + +popd diff --git a/software/utils/debug/util/__init__.py b/software/tools/debug/__init__.py similarity index 100% rename from software/utils/debug/util/__init__.py rename to software/tools/debug/__init__.py diff --git a/software/utils/debug/debug_cli.py b/software/tools/debug/debug_cli.py similarity index 98% rename from software/utils/debug/debug_cli.py rename to software/tools/debug/debug_cli.py index 55271786a..bf4823613 100755 --- a/software/utils/debug/debug_cli.py +++ b/software/tools/debug/debug_cli.py @@ -32,16 +32,20 @@ import numpy as np import matplotlib.pyplot as plt from pathlib import Path -from util.colors import * -from util.error import Error -from util.serial_detect import DeviceScanner -from debug_lib.controller_debug import ControllerDebugInterface, MODE_BOOT -from debug_lib.var_info import VAR_ACCESS_READ_ONLY, VAR_ACCESS_WRITE, VAR_FLOAT_ARRAY -import debug_lib.test_data -import debug_funcs +from debug.util.colors import * +from debug.util.error import Error +from debug.util.serial_detect import DeviceScanner +from debug.debug_lib.controller_debug import ControllerDebugInterface, MODE_BOOT +from debug.debug_lib.var_info import ( + VAR_ACCESS_READ_ONLY, + VAR_ACCESS_WRITE, + VAR_FLOAT_ARRAY, +) +import debug.debug_lib.test_data as test_data +import debug.debug_funcs as debug_funcs MANIFEST_URL = "https://docs.google.com/spreadsheets/d/e/2PACX-1vRduOfterWmAy_xrc356rRhjz4QDLgOScgG1VPx2-KNeH8zYEe29SCw_DKOJG-5hqSO6BXmG1BumUul/pub?gid=0&single=true&output=tsv" -LOCAL_DATA_PATH = "../../../local_data" +LOCAL_DATA_PATH = "../../local_data" class ArgparseShowHelpError(Exception): @@ -84,10 +88,10 @@ class CmdLine(cmd.Cmd): test_data_dir: Path def __init__(self, connect_to): - super(CmdLine, self).__init__() + super().__init__() script_path = Path(__file__).parent.resolve() self.scripts_directory = "scripts" - self.test_scenarios_dir = (script_path / "test_scenarios").resolve() + self.test_scenarios_dir = (script_path.parent / "scenarios").resolve() self.local_data_dir = (script_path / LOCAL_DATA_PATH).resolve(strict=False) self.test_data_dir = (self.local_data_dir / "test_data").resolve(strict=False) self.device_finder = DeviceScanner(self.local_data_dir / "device_manifest.tsv") diff --git a/software/utils/debug/debug_funcs.py b/software/tools/debug/debug_funcs.py similarity index 100% rename from software/utils/debug/debug_funcs.py rename to software/tools/debug/debug_funcs.py diff --git a/software/tools/debug/debug_lib/__init__.py b/software/tools/debug/debug_lib/__init__.py new file mode 100644 index 000000000..e69de29bb diff --git a/software/utils/debug/debug_lib/controller_debug.py b/software/tools/debug/debug_lib/controller_debug.py similarity index 98% rename from software/utils/debug/debug_lib/controller_debug.py rename to software/tools/debug/debug_lib/controller_debug.py index fc7f5a3b3..0d596ac7b 100755 --- a/software/utils/debug/debug_lib/controller_debug.py +++ b/software/tools/debug/debug_lib/controller_debug.py @@ -20,12 +20,12 @@ """ -import debug_lib.debug_types as debug_types -import debug_lib.var_info as var_info -from debug_lib.test_scenario import TestScenario -from debug_lib.test_data import * -from util.error import Error -from util.colors import red, orange +import debug.debug_lib.debug_types as debug_types +import debug.debug_lib.var_info as var_info +from debug.debug_lib.test_scenario import TestScenario +from debug.debug_lib.test_data import * +from debug.util.error import Error +from debug.util.colors import red, orange import serial import threading import time diff --git a/software/utils/debug/debug_lib/debug_types.py b/software/tools/debug/debug_lib/debug_types.py similarity index 100% rename from software/utils/debug/debug_lib/debug_types.py rename to software/tools/debug/debug_lib/debug_types.py diff --git a/software/utils/debug/debug_lib/test_data.py b/software/tools/debug/debug_lib/test_data.py similarity index 98% rename from software/utils/debug/debug_lib/test_data.py rename to software/tools/debug/debug_lib/test_data.py index 4d3756691..dd240c1c2 100755 --- a/software/utils/debug/debug_lib/test_data.py +++ b/software/tools/debug/debug_lib/test_data.py @@ -20,8 +20,8 @@ """ -from debug_lib.test_scenario import TestScenario -from util.colors import red +from debug.debug_lib.test_scenario import TestScenario +from debug.util.colors import red import datetime import matplotlib.pyplot as plt import dateutil.parser diff --git a/software/utils/debug/debug_lib/test_scenario.py b/software/tools/debug/debug_lib/test_scenario.py similarity index 99% rename from software/utils/debug/debug_lib/test_scenario.py rename to software/tools/debug/debug_lib/test_scenario.py index 23283b3f5..98bc0cf8d 100755 --- a/software/utils/debug/debug_lib/test_scenario.py +++ b/software/tools/debug/debug_lib/test_scenario.py @@ -22,7 +22,7 @@ """ -from util.colors import Color, blue +from debug.util.colors import Color, blue from typing import Dict from pathlib import Path import pandas diff --git a/software/utils/debug/debug_lib/var_info.py b/software/tools/debug/debug_lib/var_info.py similarity index 98% rename from software/utils/debug/debug_lib/var_info.py rename to software/tools/debug/debug_lib/var_info.py index 9dc46944f..96b96632e 100755 --- a/software/utils/debug/debug_lib/var_info.py +++ b/software/tools/debug/debug_lib/var_info.py @@ -20,8 +20,8 @@ """ -import debug_lib.debug_types as debug_types -from util.error import Error +import debug.debug_lib.debug_types as debug_types +from debug.util.error import Error # TODO: Import constants from proto instead! diff --git a/software/utils/debug/scripts/README.md b/software/tools/debug/scripts/README.md similarity index 100% rename from software/utils/debug/scripts/README.md rename to software/tools/debug/scripts/README.md diff --git a/software/utils/debug/scripts/peek_dma.py b/software/tools/debug/scripts/peek_dma.py similarity index 100% rename from software/utils/debug/scripts/peek_dma.py rename to software/tools/debug/scripts/peek_dma.py diff --git a/software/utils/debug/scripts/valve_calibration.py b/software/tools/debug/scripts/valve_calibration.py similarity index 100% rename from software/utils/debug/scripts/valve_calibration.py rename to software/tools/debug/scripts/valve_calibration.py diff --git a/software/tools/debug/util/__init__.py b/software/tools/debug/util/__init__.py new file mode 100644 index 000000000..e69de29bb diff --git a/software/utils/debug/util/colors.py b/software/tools/debug/util/colors.py similarity index 100% rename from software/utils/debug/util/colors.py rename to software/tools/debug/util/colors.py diff --git a/software/utils/debug/util/error.py b/software/tools/debug/util/error.py similarity index 100% rename from software/utils/debug/util/error.py rename to software/tools/debug/util/error.py diff --git a/software/utils/debug/util/serial_detect.py b/software/tools/debug/util/serial_detect.py similarity index 99% rename from software/utils/debug/util/serial_detect.py rename to software/tools/debug/util/serial_detect.py index b29854da9..2c68bdf31 100755 --- a/software/utils/debug/util/serial_detect.py +++ b/software/tools/debug/util/serial_detect.py @@ -22,7 +22,7 @@ """ -from util.colors import green, red, gray +from debug.util.colors import green, red, gray import json import pandas import subprocess diff --git a/software/tools/miscellaneous/README.md b/software/tools/miscellaneous/README.md new file mode 100644 index 000000000..33ca6dcf1 --- /dev/null +++ b/software/tools/miscellaneous/README.md @@ -0,0 +1,4 @@ +# Miscellaneous stand-alone tools + +* [decoder.py](decoder.py) - decoder of serial packets sent from controller to GUI. +* [mock_cycle_controller.py](mock_cycle_controller.py) - primitive controller emulator to test communications protocols diff --git a/software/tools/miscellaneous/__init__.py b/software/tools/miscellaneous/__init__.py new file mode 100644 index 000000000..e69de29bb diff --git a/software/tools/miscellaneous/decoder.py b/software/tools/miscellaneous/decoder.py new file mode 100755 index 000000000..a2f50719f --- /dev/null +++ b/software/tools/miscellaneous/decoder.py @@ -0,0 +1,37 @@ +import serial +from protocols import network_protocol_pb2 +import time +import argparse + + +def main() -> None: + parser = argparse.ArgumentParser() + parser.add_argument("serialport", metavar="SERIAL", type=str, help="Serial port") + args = parser.parse_args() + + port = serial.Serial(args.serialport, 115200) + + while True: + last_packet = time.time() + s = b"" + while True: + if port.in_waiting > 0: + b = port.read() + s += b + last_packet = time.time() + if ( + time.time() - last_packet + ) > 0.001: # Arbitrary longish time picked up by experiment + break + + stat = network_protocol_pb2.ControllerStatus() + + try: + stat.ParseFromString(s) + print("------") + print(stat) + except: + pass + + while port.in_waiting == 0: + pass diff --git a/software/tools/miscellaneous/mock_cycle_controller.py b/software/tools/miscellaneous/mock_cycle_controller.py new file mode 100755 index 000000000..83fb2cbc2 --- /dev/null +++ b/software/tools/miscellaneous/mock_cycle_controller.py @@ -0,0 +1,64 @@ +# use socat -d -d pty,raw,echo=0 pty,raw,echo=0 +# you will get something like this: + +# 2020/05/02 22:27:09 socat[23367] N PTY is /dev/pts/1 +# 2020/05/02 22:27:09 socat[23367] N PTY is /dev/pts/6 +# 2020/05/02 22:27:09 socat[23367] N starting data transfer loop with FDs [5,5] and [7,7] + +# note the /dev/pts/*, +# poetry run mock-controller /dev/pts/1 +# and specify the other one for ventilator GUI + +import serial +from protocols import network_protocol_pb2 +import time +import argparse +import math + + +def main() -> None: + parser = argparse.ArgumentParser() + parser.add_argument("serialport", metavar="SERIAL", type=str, help="Serial port") + parser.add_argument( + "interframe_interval_ms", + metavar="INTERVAL", + type=int, + help="Milliseconds between frames", + ) + args = parser.parse_args() + + port = serial.Serial(args.serialport, 115200) + + stat = network_protocol_pb2.ControllerStatus() + stat.uptime_ms = int(time.time()) + stat.pressure_setpoint_cm_h2o = 1 + stat.fan_power = 0.8 + + stat.sensor_readings.breath_id = 0 + stat.sensor_readings.patient_pressure_cm_h2o = 0.9 + stat.sensor_readings.volume_ml = -0.5 + stat.sensor_readings.flow_ml_per_min = 10 + stat.sensor_readings.inflow_pressure_diff_cm_h2o = 0.5 + stat.sensor_readings.outflow_pressure_diff_cm_h2o = 0.5 + stat.sensor_readings.flow_correction_ml_per_min = 0.5 + stat.sensor_readings.fio2 = 0.5 + + stat.active_params.fio2 = 0.5 + stat.active_params.mode = network_protocol_pb2.OFF + stat.active_params.peep_cm_h2o = 2 + stat.active_params.breaths_per_min = 8 + stat.active_params.pip_cm_h2o = 1 + stat.active_params.inspiratory_expiratory_ratio = 0.5 + stat.active_params.inspiratory_trigger_cm_h2o = 2 + stat.active_params.expiratory_trigger_ml_per_min = 900 + + i = 0 + while True: + stat.sensor_readings.breath_id += 1 + stat.sensor_readings.patient_pressure_cm_h2o = math.sin(i) + port.write(stat.SerializeToString()) + port.flush() + while port.in_waiting > 0: + port.read() + time.sleep(0.001 * args.interframe_interval_ms) + i += 0.01 diff --git a/software/tools/poetry.lock b/software/tools/poetry.lock new file mode 100644 index 000000000..a543b4582 --- /dev/null +++ b/software/tools/poetry.lock @@ -0,0 +1,1239 @@ +# This file is automatically @generated by Poetry 1.8.4 and should not be changed by hand. + +[[package]] +name = "ajsonrpc" +version = 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"README.md" +packages = [ + {include = "debug"}, + {include = "miscellaneous"}, + {include = "protocols"} +] + +[tool.poetry.dependencies] +python = ">=3.10" +pyserial = "^3.5" +matplotlib = "^3.9.2" +pandas = "^2.2.3" +gitpython = "^3.1.43" +platformio = "^6.1.16" +protobuf = "^5.28.3" + +[tool.poetry.group.dev.dependencies] +pytest = "^8.3.3" + +[build-system] +requires = ["poetry-core"] +build-backend = "poetry.core.masonry.api" + +[tool.poetry.scripts] +debug = "debug.debug_cli:main" +decode = "miscellaneous.decoder:main" +mock_controller = "miscellaneous.mock_cycle_controller:main" + +[tool.pytest.ini_options] +testpaths = [ + "tests", +] diff --git a/software/utils/debug/test_scenarios/dummy.json b/software/tools/scenarios/dummy.json similarity index 100% rename from software/utils/debug/test_scenarios/dummy.json rename to software/tools/scenarios/dummy.json diff --git a/software/utils/debug/test_scenarios/iso_pressure_tests.csv b/software/tools/scenarios/iso_pressure_tests.csv similarity index 100% rename from software/utils/debug/test_scenarios/iso_pressure_tests.csv rename to software/tools/scenarios/iso_pressure_tests.csv diff --git a/software/utils/debug/test_scenarios/iso_pressure_tests.json b/software/tools/scenarios/iso_pressure_tests.json similarity index 100% rename from software/utils/debug/test_scenarios/iso_pressure_tests.json rename to software/tools/scenarios/iso_pressure_tests.json diff --git a/software/utils/debug/test_scenarios/iso_volume_tests.csv b/software/tools/scenarios/iso_volume_tests.csv similarity index 100% rename from software/utils/debug/test_scenarios/iso_volume_tests.csv rename to software/tools/scenarios/iso_volume_tests.csv diff --git a/software/utils/debug/test_scenarios/iso_volume_tests.json b/software/tools/scenarios/iso_volume_tests.json similarity index 100% rename from software/utils/debug/test_scenarios/iso_volume_tests.json rename to software/tools/scenarios/iso_volume_tests.json diff --git a/software/tools/tests/__init__.py b/software/tools/tests/__init__.py new file mode 100644 index 000000000..e69de29bb diff --git a/software/utils/debug/unit_test.py b/software/tools/tests/unit_test.py similarity index 96% rename from software/utils/debug/unit_test.py rename to software/tools/tests/unit_test.py index 6ca237d63..e59dfaf77 100755 --- a/software/utils/debug/unit_test.py +++ b/software/tools/tests/unit_test.py @@ -1,5 +1,5 @@ -import debug_funcs -from debug_cli import CmdLine +import debug.debug_funcs as debug_funcs +from debug.debug_cli import CmdLine import numpy as np import pytest diff --git a/software/utils/README.md b/software/utils/README.md deleted file mode 100644 index 856d539b5..000000000 --- a/software/utils/README.md +++ /dev/null @@ -1,23 +0,0 @@ -# Utilities - -## Raspberry pi deployment scripts - -If a proper enclosed unit is built as described under [manufacturing](../../manufacturing), it should be possible to deploy all GUI and controller software directly via the Raspberry pi that is integrated into the ventilator unit. - -Scripts for doing so are available under [rpi_config](rpi_config). - -## controller debug client - -[/debug](debug) subdirectory contains a set of Python scripts that talk to the controller via the virtual serial port that is created when you plug a USB cable into the controller's debug port. The command line interface allows you to examine and directly manipulate a number of low level variables, as well as run calibration routines and automated performance tests. - -There is a brief tutorial on how to use it right next to the python code in the [/debug](debug) subdirectory. Script can also be accessed via the common controller utilities script at [software/controller/controller.sh](../controller/controller.sh). - -## decoder - -[decoder.py](decoder.py) - -This is a decoder of serial packets sent from controller to GUI. - -## Regenerating python proto bindings - -Use the [common.sh](../common/common.sh) with the `generate` command. diff --git a/software/utils/debug/debug.sh b/software/utils/debug/debug.sh deleted file mode 100755 index 478b632f9..000000000 --- a/software/utils/debug/debug.sh +++ /dev/null @@ -1,42 +0,0 @@ -#!/bin/bash - -# Copyright 2020-2022, RespiraWorks -# -# Licensed under the Apache License, Version 2.0 (the "License"); -# you may not use this file except in compliance with the License. -# You may obtain a copy of the License at -# -# http://www.apache.org/licenses/LICENSE-2.0 -# -# Unless required by applicable law or agreed to in writing, software -# distributed under the License is distributed on an "AS IS" BASIS, -# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. -# See the License for the specific language governing permissions and -# limitations under the License. - -# Fail if any command fails -set -e -set -o pipefail - -# Print each command as it executes -if [ -n "$VERBOSE" ]; then - set -o xtrace -fi - -# Silent pushd -pushd () { - command pushd "$@" > /dev/null -} - -# Silent popd -popd () { - command popd > /dev/null -} - - -# This script should work no matter where you call it from. -MY_PATH="$(dirname "$0")" - -pushd $MY_PATH -PYTHONPATH=$MY_PATH ./debug_cli.py "${@:1}" -popd diff --git a/software/utils/decoder.py b/software/utils/decoder.py deleted file mode 100755 index c48193444..000000000 --- a/software/utils/decoder.py +++ /dev/null @@ -1,31 +0,0 @@ -import serial # pip install pySerial -import struct -from debug.lib.protocols import network_protocol_pb2 -import time - -p = serial.Serial("/dev/ttyACM0", 115200) - -while True: - last_packet = time.time() - s = b"" - while True: - if p.in_waiting > 0: - b = p.read() - s += b - last_packet = time.time() - if ( - time.time() - last_packet - ) > 0.001: # Arbitrary longish time picked up by experiment - break - - stat = network_protocol_pb2.ControllerStatus() - - try: - stat.ParseFromString(s) - print("------") - print(stat) - except: - pass - - while p.in_waiting == 0: - pass diff --git a/software/utils/mock_cycle_controller.py b/software/utils/mock_cycle_controller.py deleted file mode 100755 index 4fcb74a40..000000000 --- a/software/utils/mock_cycle_controller.py +++ /dev/null @@ -1,67 +0,0 @@ -#!/usr/bin/python3 -u - -# use socat -d -d pty,raw,echo=0 pty,raw,echo=0 -# you will get something like this: - -# 2020/05/02 22:27:09 socat[23367] N PTY is /dev/pts/1 -# 2020/05/02 22:27:09 socat[23367] N PTY is /dev/pts/6 -# 2020/05/02 22:27:09 socat[23367] N starting data transfer loop with FDs [5,5] and [7,7] - -# note the /dev/pts/*, -# run mock-cycle-controller.py /dev/pts/1 -# and specify the other one for ventillator GUI - -import serial -import struct -from debug.lib.protocols import network_protocol_pb2 -import time -import argparse -import math - -parser = argparse.ArgumentParser() -parser.add_argument("serialport", metavar="SERIAL", type=str, help="Serial port") -parser.add_argument( - "interframe_interval_ms", - metavar="INTERVAL", - type=int, - help="Milliseconds between frames", -) -args = parser.parse_args() - -p = serial.Serial(args.serialport, 115200) - -stat = network_protocol_pb2.ControllerStatus() -stat.uptime_ms = int(time.time()) -stat.sensor_readings.pressure_cm_h2o = 0.9 -stat.sensor_readings.volume_ml = -0.5 -stat.sensor_readings.flow_ml_per_min = 0.5 - -alarm = stat.controller_alarms.add() -alarm.start_time = int(time.time()) - 1 -alarm.kind = network_protocol_pb2.RESPIRATORY_RATE_TOO_LOW - -stat.pressure_setpoint_cm_h2o = 1 -stat.fan_power = 0.8 - -stat.active_params.mode = network_protocol_pb2.OFF -stat.active_params.peep_cm_h2o = 2 -stat.active_params.breaths_per_min = 8 -stat.active_params.pip_cm_h2o = 1 -stat.active_params.inspiratory_expiratory_ratio = 0.5 -stat.active_params.rise_time_ms = 10 -stat.active_params.inspiratory_trigger_cm_h2o = 2 -stat.active_params.expiratory_trigger_ml_per_min = 900 -stat.active_params.alarm_lo_tidal_volume_ml = 900 -stat.active_params.alarm_hi_tidal_volume_ml = 100 -stat.active_params.alarm_lo_breaths_per_min = 6 -stat.active_params.alarm_hi_breaths_per_min = 10 - -i = 0 -while True: - stat.sensor_readings.pressure_cm_h2o = math.sin(i) - p.write(stat.SerializeToString()) - p.flush() - while p.in_waiting > 0: - p.read() - time.sleep(0.001 * args.interframe_interval_ms) - i += 0.01 diff --git a/software/utils/nanopb_pb2.py b/software/utils/nanopb_pb2.py deleted file mode 100644 index a742b8afb..000000000 --- a/software/utils/nanopb_pb2.py +++ /dev/null @@ -1,768 +0,0 @@ -# Generated by the protocol buffer compiler. 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-FieldType = enum_type_wrapper.EnumTypeWrapper(_FIELDTYPE) -_INTSIZE = _descriptor.EnumDescriptor( - name="IntSize", - full_name="IntSize", - filename=None, - file=DESCRIPTOR, - values=[ - _descriptor.EnumValueDescriptor( - name="IS_DEFAULT", index=0, number=0, options=None, type=None - ), - _descriptor.EnumValueDescriptor( - name="IS_8", index=1, number=8, options=None, type=None - ), - _descriptor.EnumValueDescriptor( - name="IS_16", index=2, number=16, options=None, type=None - ), - _descriptor.EnumValueDescriptor( - name="IS_32", index=3, number=32, options=None, type=None - ), - _descriptor.EnumValueDescriptor( - name="IS_64", index=4, number=64, options=None, type=None - ), - ], - containing_type=None, - options=None, - serialized_start=1017, - serialized_end=1085, -) -_sym_db.RegisterEnumDescriptor(_INTSIZE) - -IntSize = enum_type_wrapper.EnumTypeWrapper(_INTSIZE) -_TYPENAMEMANGLING = _descriptor.EnumDescriptor( - name="TypenameMangling", - full_name="TypenameMangling", - filename=None, - file=DESCRIPTOR, - values=[ - _descriptor.EnumValueDescriptor( - name="M_NONE", index=0, number=0, options=None, type=None - ), - _descriptor.EnumValueDescriptor( - name="M_STRIP_PACKAGE", index=1, number=1, options=None, type=None - ), - _descriptor.EnumValueDescriptor( - name="M_FLATTEN", index=2, number=2, options=None, type=None - ), - _descriptor.EnumValueDescriptor( - name="M_PACKAGE_INITIALS", index=3, number=3, options=None, type=None - ), - ], - containing_type=None, - options=None, - serialized_start=1087, - serialized_end=1177, -) -_sym_db.RegisterEnumDescriptor(_TYPENAMEMANGLING) - -TypenameMangling = enum_type_wrapper.EnumTypeWrapper(_TYPENAMEMANGLING) -_DESCRIPTORSIZE = _descriptor.EnumDescriptor( - name="DescriptorSize", - full_name="DescriptorSize", - filename=None, - file=DESCRIPTOR, - values=[ - _descriptor.EnumValueDescriptor( - name="DS_AUTO", index=0, number=0, options=None, type=None - ), - _descriptor.EnumValueDescriptor( - name="DS_1", index=1, number=1, options=None, type=None - ), - _descriptor.EnumValueDescriptor( - name="DS_2", index=2, number=2, options=None, type=None - ), - _descriptor.EnumValueDescriptor( - name="DS_4", index=3, number=4, options=None, type=None - ), - _descriptor.EnumValueDescriptor( - name="DS_8", index=4, number=8, options=None, type=None - ), - ], - containing_type=None, - options=None, - serialized_start=1179, - serialized_end=1248, -) -_sym_db.RegisterEnumDescriptor(_DESCRIPTORSIZE) - -DescriptorSize = enum_type_wrapper.EnumTypeWrapper(_DESCRIPTORSIZE) -FT_DEFAULT = 0 -FT_CALLBACK = 1 -FT_POINTER = 4 -FT_STATIC = 2 -FT_IGNORE = 3 -FT_INLINE = 5 -IS_DEFAULT = 0 -IS_8 = 8 -IS_16 = 16 -IS_32 = 32 -IS_64 = 64 -M_NONE = 0 -M_STRIP_PACKAGE = 1 -M_FLATTEN = 2 -M_PACKAGE_INITIALS = 3 -DS_AUTO = 0 -DS_1 = 1 -DS_2 = 2 -DS_4 = 4 -DS_8 = 8 - -NANOPB_FILEOPT_FIELD_NUMBER = 1010 -nanopb_fileopt = _descriptor.FieldDescriptor( - name="nanopb_fileopt", - full_name="nanopb_fileopt", - index=0, - number=1010, - type=11, - cpp_type=10, - label=1, - has_default_value=False, - default_value=None, - message_type=None, - enum_type=None, - containing_type=None, - is_extension=True, - extension_scope=None, - options=None, -) -NANOPB_MSGOPT_FIELD_NUMBER = 1010 -nanopb_msgopt = _descriptor.FieldDescriptor( - name="nanopb_msgopt", - full_name="nanopb_msgopt", - index=1, - number=1010, - type=11, - cpp_type=10, - label=1, - has_default_value=False, - default_value=None, - message_type=None, - enum_type=None, - containing_type=None, - is_extension=True, - extension_scope=None, - options=None, -) -NANOPB_ENUMOPT_FIELD_NUMBER = 1010 -nanopb_enumopt = _descriptor.FieldDescriptor( - name="nanopb_enumopt", - full_name="nanopb_enumopt", - index=2, - number=1010, - type=11, - cpp_type=10, - label=1, - has_default_value=False, - default_value=None, - message_type=None, - enum_type=None, - containing_type=None, - is_extension=True, - extension_scope=None, - options=None, -) -NANOPB_FIELD_NUMBER = 1010 -nanopb = _descriptor.FieldDescriptor( - name="nanopb", - full_name="nanopb", - index=3, - number=1010, - type=11, - cpp_type=10, - label=1, - has_default_value=False, - default_value=None, - message_type=None, - enum_type=None, - containing_type=None, - is_extension=True, - extension_scope=None, - options=None, -) - - -_NANOPBOPTIONS = _descriptor.Descriptor( - name="NanoPBOptions", - full_name="NanoPBOptions", - filename=None, - file=DESCRIPTOR, - containing_type=None, - fields=[ - _descriptor.FieldDescriptor( - name="max_size", - full_name="NanoPBOptions.max_size", - index=0, - number=1, - type=5, - cpp_type=1, - label=1, - has_default_value=False, - default_value=0, - message_type=None, - enum_type=None, - containing_type=None, - is_extension=False, - extension_scope=None, - options=None, - ), - _descriptor.FieldDescriptor( - name="max_length", - full_name="NanoPBOptions.max_length", - index=1, - number=14, - type=5, - cpp_type=1, - label=1, - has_default_value=False, - default_value=0, - message_type=None, - enum_type=None, - containing_type=None, - is_extension=False, - extension_scope=None, - options=None, - ), - _descriptor.FieldDescriptor( - name="max_count", - full_name="NanoPBOptions.max_count", - index=2, - number=2, - type=5, - cpp_type=1, - label=1, - has_default_value=False, - default_value=0, - message_type=None, - enum_type=None, - containing_type=None, - is_extension=False, - extension_scope=None, - options=None, - ), - _descriptor.FieldDescriptor( - name="int_size", - full_name="NanoPBOptions.int_size", - index=3, - number=7, - type=14, - cpp_type=8, - label=1, - has_default_value=True, - default_value=0, - message_type=None, - enum_type=None, - containing_type=None, - is_extension=False, - extension_scope=None, - options=None, - ), - _descriptor.FieldDescriptor( - name="type", - full_name="NanoPBOptions.type", - index=4, - number=3, - type=14, - cpp_type=8, - label=1, - has_default_value=True, - default_value=0, - message_type=None, - enum_type=None, - containing_type=None, - is_extension=False, - extension_scope=None, - options=None, - ), - _descriptor.FieldDescriptor( - name="long_names", - full_name="NanoPBOptions.long_names", - index=5, - number=4, - type=8, - cpp_type=7, - label=1, - has_default_value=True, - default_value=True, - message_type=None, - enum_type=None, - containing_type=None, - is_extension=False, - extension_scope=None, - options=None, - ), - _descriptor.FieldDescriptor( - name="packed_struct", - full_name="NanoPBOptions.packed_struct", - index=6, - number=5, - type=8, - cpp_type=7, - label=1, - has_default_value=True, - default_value=False, - message_type=None, - enum_type=None, - containing_type=None, - is_extension=False, - extension_scope=None, - options=None, - ), - _descriptor.FieldDescriptor( - name="packed_enum", - full_name="NanoPBOptions.packed_enum", - index=7, - number=10, - type=8, - cpp_type=7, - label=1, - has_default_value=True, - default_value=False, - message_type=None, - enum_type=None, - containing_type=None, - is_extension=False, - extension_scope=None, - options=None, - ), - _descriptor.FieldDescriptor( - name="skip_message", - full_name="NanoPBOptions.skip_message", - index=8, - number=6, - type=8, - cpp_type=7, - label=1, - has_default_value=True, - default_value=False, - message_type=None, - enum_type=None, - containing_type=None, - is_extension=False, - extension_scope=None, - options=None, - ), - _descriptor.FieldDescriptor( - name="no_unions", - full_name="NanoPBOptions.no_unions", - index=9, - number=8, - type=8, - cpp_type=7, - label=1, - has_default_value=True, - default_value=False, - message_type=None, - enum_type=None, - containing_type=None, - is_extension=False, - extension_scope=None, - options=None, - ), - _descriptor.FieldDescriptor( - name="msgid", - full_name="NanoPBOptions.msgid", - index=10, - number=9, - type=13, - cpp_type=3, - label=1, - has_default_value=False, - default_value=0, - message_type=None, - enum_type=None, - containing_type=None, - is_extension=False, - extension_scope=None, - options=None, - ), - _descriptor.FieldDescriptor( - name="anonymous_oneof", - full_name="NanoPBOptions.anonymous_oneof", - index=11, - number=11, - type=8, - cpp_type=7, - label=1, - has_default_value=True, - default_value=False, - message_type=None, - enum_type=None, - containing_type=None, - is_extension=False, - extension_scope=None, - options=None, - ), - _descriptor.FieldDescriptor( - name="proto3", - full_name="NanoPBOptions.proto3", - index=12, - number=12, - type=8, - cpp_type=7, - label=1, - has_default_value=True, - default_value=False, - message_type=None, - enum_type=None, - containing_type=None, - is_extension=False, - extension_scope=None, - options=None, - ), - _descriptor.FieldDescriptor( - name="proto3_singular_msgs", - full_name="NanoPBOptions.proto3_singular_msgs", - index=13, - number=21, - type=8, - cpp_type=7, - label=1, - has_default_value=True, - default_value=False, - message_type=None, - enum_type=None, - containing_type=None, - is_extension=False, - extension_scope=None, - options=None, - ), - _descriptor.FieldDescriptor( - name="enum_to_string", - full_name="NanoPBOptions.enum_to_string", - index=14, - number=13, - type=8, - cpp_type=7, - label=1, - has_default_value=True, - default_value=False, - message_type=None, - enum_type=None, - containing_type=None, - is_extension=False, - extension_scope=None, - options=None, - ), - _descriptor.FieldDescriptor( - name="fixed_length", - full_name="NanoPBOptions.fixed_length", - index=15, - number=15, - type=8, - cpp_type=7, - label=1, - has_default_value=True, - default_value=False, - message_type=None, - enum_type=None, - containing_type=None, - is_extension=False, - extension_scope=None, - options=None, - ), - _descriptor.FieldDescriptor( - name="fixed_count", - full_name="NanoPBOptions.fixed_count", - index=16, - number=16, - type=8, - cpp_type=7, - label=1, - has_default_value=True, - default_value=False, - message_type=None, - enum_type=None, - containing_type=None, - is_extension=False, - extension_scope=None, - options=None, - ), - _descriptor.FieldDescriptor( - name="submsg_callback", - full_name="NanoPBOptions.submsg_callback", - index=17, - number=22, - type=8, - cpp_type=7, - label=1, - has_default_value=True, - default_value=False, - message_type=None, - enum_type=None, - containing_type=None, - is_extension=False, - extension_scope=None, - options=None, - ), - _descriptor.FieldDescriptor( - name="mangle_names", - full_name="NanoPBOptions.mangle_names", - index=18, - number=17, - type=14, - cpp_type=8, - label=1, - has_default_value=True, - default_value=0, - message_type=None, - enum_type=None, - containing_type=None, - is_extension=False, - extension_scope=None, - options=None, - ), - _descriptor.FieldDescriptor( - name="callback_datatype", - full_name="NanoPBOptions.callback_datatype", - index=19, - number=18, - type=9, - cpp_type=9, - label=1, - has_default_value=True, - default_value=_b("pb_callback_t").decode("utf-8"), - message_type=None, - enum_type=None, - containing_type=None, - is_extension=False, - extension_scope=None, - options=None, - ), - _descriptor.FieldDescriptor( - name="callback_function", - full_name="NanoPBOptions.callback_function", - index=20, - number=19, - type=9, - cpp_type=9, - label=1, - has_default_value=True, - default_value=_b("pb_default_field_callback").decode("utf-8"), - message_type=None, - enum_type=None, - containing_type=None, - is_extension=False, - extension_scope=None, - options=None, - ), - _descriptor.FieldDescriptor( - name="descriptorsize", - full_name="NanoPBOptions.descriptorsize", - index=21, - number=20, - type=14, - cpp_type=8, - label=1, - has_default_value=True, - default_value=0, - message_type=None, - enum_type=None, - containing_type=None, - is_extension=False, - extension_scope=None, - options=None, - ), - _descriptor.FieldDescriptor( - name="default_has", - full_name="NanoPBOptions.default_has", - index=22, - number=23, - type=8, - cpp_type=7, - label=1, - has_default_value=True, - default_value=False, - message_type=None, - enum_type=None, - containing_type=None, - is_extension=False, - extension_scope=None, - options=None, - ), - _descriptor.FieldDescriptor( - name="include", - full_name="NanoPBOptions.include", - index=23, - number=24, - type=9, - cpp_type=9, - label=3, - has_default_value=False, - default_value=[], - message_type=None, - enum_type=None, - containing_type=None, - is_extension=False, - extension_scope=None, - options=None, - ), - _descriptor.FieldDescriptor( - name="exclude", - full_name="NanoPBOptions.exclude", - index=24, - number=26, - type=9, - cpp_type=9, - label=3, - has_default_value=False, - default_value=[], - message_type=None, - enum_type=None, - containing_type=None, - is_extension=False, - extension_scope=None, - options=None, - ), - _descriptor.FieldDescriptor( - name="package", - full_name="NanoPBOptions.package", - index=25, - number=25, - type=9, - cpp_type=9, - label=1, - has_default_value=False, - default_value=_b("").decode("utf-8"), - message_type=None, - enum_type=None, - containing_type=None, - is_extension=False, - extension_scope=None, - options=None, - ), - _descriptor.FieldDescriptor( - name="type_override", - full_name="NanoPBOptions.type_override", - index=26, - number=27, - type=14, - cpp_type=8, - label=1, - has_default_value=False, - default_value=1, - message_type=None, - enum_type=None, - containing_type=None, - is_extension=False, - extension_scope=None, - options=None, - ), - ], - extensions=[], - nested_types=[], - enum_types=[], - options=None, - is_extendable=False, - syntax="proto2", - extension_ranges=[], - oneofs=[], - serialized_start=51, - serialized_end=908, -) - -_NANOPBOPTIONS.fields_by_name["int_size"].enum_type = _INTSIZE -_NANOPBOPTIONS.fields_by_name["type"].enum_type = _FIELDTYPE -_NANOPBOPTIONS.fields_by_name["mangle_names"].enum_type = _TYPENAMEMANGLING -_NANOPBOPTIONS.fields_by_name["descriptorsize"].enum_type = _DESCRIPTORSIZE -_NANOPBOPTIONS.fields_by_name[ - "type_override" -].enum_type = google_dot_protobuf_dot_descriptor__pb2._FIELDDESCRIPTORPROTO_TYPE -DESCRIPTOR.message_types_by_name["NanoPBOptions"] = _NANOPBOPTIONS -DESCRIPTOR.enum_types_by_name["FieldType"] = _FIELDTYPE -DESCRIPTOR.enum_types_by_name["IntSize"] = _INTSIZE -DESCRIPTOR.enum_types_by_name["TypenameMangling"] = _TYPENAMEMANGLING -DESCRIPTOR.enum_types_by_name["DescriptorSize"] = _DESCRIPTORSIZE -DESCRIPTOR.extensions_by_name["nanopb_fileopt"] = nanopb_fileopt -DESCRIPTOR.extensions_by_name["nanopb_msgopt"] = nanopb_msgopt -DESCRIPTOR.extensions_by_name["nanopb_enumopt"] = nanopb_enumopt -DESCRIPTOR.extensions_by_name["nanopb"] = nanopb - -NanoPBOptions = _reflection.GeneratedProtocolMessageType( - "NanoPBOptions", - (_message.Message,), - dict( - DESCRIPTOR=_NANOPBOPTIONS, - __module__="nanopb_pb2" - # @@protoc_insertion_point(class_scope:NanoPBOptions) - ), -) -_sym_db.RegisterMessage(NanoPBOptions) - -nanopb_fileopt.message_type = _NANOPBOPTIONS -google_dot_protobuf_dot_descriptor__pb2.FileOptions.RegisterExtension(nanopb_fileopt) -nanopb_msgopt.message_type = _NANOPBOPTIONS -google_dot_protobuf_dot_descriptor__pb2.MessageOptions.RegisterExtension(nanopb_msgopt) -nanopb_enumopt.message_type = _NANOPBOPTIONS -google_dot_protobuf_dot_descriptor__pb2.EnumOptions.RegisterExtension(nanopb_enumopt) -nanopb.message_type = _NANOPBOPTIONS -google_dot_protobuf_dot_descriptor__pb2.FieldOptions.RegisterExtension(nanopb) - -DESCRIPTOR.has_options = True -DESCRIPTOR._options = _descriptor._ParseOptions( - descriptor_pb2.FileOptions(), _b("\n\030fi.kapsi.koti.jpa.nanopb") -) -# @@protoc_insertion_point(module_scope) diff --git a/software/utils/rpi_config/user/Desktop/vent-update.desktop b/software/utils/rpi_config/user/Desktop/vent-update.desktop deleted file mode 100755 index 67c0349f8..000000000 --- a/software/utils/rpi_config/user/Desktop/vent-update.desktop +++ /dev/null @@ -1,8 +0,0 @@ -[Desktop Entry] -Name=Update -Path=/home/admin/ventilator/software/utils/rpi_config -Exec=lxterminal -t "Ventilator update" --working-directory=/home/admin/ventilator/software/utils/rpi_config -e "source ~/.profile && ./update.sh" -Icon=/home/admin/ventilator/software/utils/icons/rw_inhale.png -Terminal=true -Type=Application -Categories=Application