Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Map PDB sequential and author numbering #10

Open
AntonPetrov opened this issue May 23, 2022 · 0 comments
Open

Map PDB sequential and author numbering #10

AntonPetrov opened this issue May 23, 2022 · 0 comments
Labels
enhancement New feature or request

Comments

@AntonPetrov
Copy link
Member

For example, the new Rfam 3D seed RF0XXXX for PDB XXXX includes a sequence ACGU...CGG, but what are the nucleotide numbers of these nucleotides in the PDB file? That numbering does not have to be sequential, it can start from 5 and not from 1 for example.

The mapping would need to be provided in separate files, possibly following the SIFTS conventions developed for proteins.

This feature was requested by Yann at the 2022 SAB meeting.

@AntonPetrov AntonPetrov added the enhancement New feature or request label May 23, 2022
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
enhancement New feature or request
Projects
None yet
Development

No branches or pull requests

1 participant