ps_venn ran fine the first time and then get an error; ps_euler runs fine.

[lcamVz]

Hello

I get this error Error in drawVennDiagram(data = x, small = small, showSetLogicLabel = showSetLogicLabel, : gplots.drawVennDiagram: This internal function is used wrongly. Please call the function 'venn' with the same arguments, instead. What this could mean? ps_euler works fine and I am able to plot.

Thanks in advance.

[Russel88]

Hi

I have not seen that error before, and have no idea how it can arise. I would need a example dataset to test if I can reproduce the error.

Best,

[Russel88]

Closing due to no answer

[ricmedveterinario]

Hi @Russel88, thanks for sharing the package,

I got the same error with this ps_venn function,

Exactly the same error output:

Error in drawVennDiagram(data = x, small = small, showSetLogicLabel = showSetLogicLabel, :
gplots.drawVennDiagram: This internal function is used wrongly. Please call the 'venn' function with the same arguments instead.

I test with other banks, such as:

data(GlobalPatterns)
date(esophagus)
data(enterotype)
date(soilrep)

Provided at: https://joey711.github.io/phyloseq/Example-Data.html and always the same error appears,

It would be interesting if you provided practical examples,

Thanks,

[Russel88]

Hmm, could it be a version problem. The following ran fine with MicEco 0.9.18 and eulerr 6.1.1:

library(phyloseq)
library(MicEco)
data(GlobalPatterns)

# Reduce the number of groups
ss <- sample_data(GlobalPatterns)
ss$SampleType <- ifelse(ss$SampleType %in% c("Soil", "Ocean"), as.character(ss$SampleType), "Others")
sample_data(GlobalPatterns) <- sample_data(ss)

# Plot
ps_venn(GlobalPatterns, group = "SampleType")

[ricmedveterinario]

@Russel88 my packages are in version:
MicEco 0.9.19 and eulerr 7.0.0.

Unfortunately, I ran the example as you demonstrated here and it gave the same error:

Error in drawVennDiagram(data = x, small = small, showSetLogicLabel = showSetLogicLabel, :
gplots.drawVennDiagram: This internal function is used wrongly. Please call the 'venn' function with the same arguments instead.

I believe that many people are going through and will have the same problem as me.

Could you provide us with a package update or other solution?. I found your package very interesting.

Thanks @Russel88,

[ricmedveterinario]

I find this package for building venn diagrams : https://github.com/dusadrian/venn, interesting, because it allows you to create larger venn graphs, with a greater number of groups,

Maybe in a future adaptation, it'll be cool.

Thanks @Russel88,