Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Fusion evaluation.py not work #34

Open
GinnyAquarius opened this issue Nov 3, 2016 · 2 comments
Open

Fusion evaluation.py not work #34

GinnyAquarius opened this issue Nov 3, 2016 · 2 comments

Comments

@GinnyAquarius
Copy link

I tried to evaluate my fusion result with command in SMC-RNA-Challenge/script/ directory:
./evaluation.py evaluateFusionDet --gtf Homo_sapiens.GRCh37.75.gtf --truth sim1_filtered.bedpe --input ../../dev/fusion.bedpe
But I get only 1 line below:
[Errno 2] No such file or directory

Have I made any mistakes? Thank you a lot.

@thomasyu888
Copy link
Collaborator

Are you running it on your local machine? If so you will need to install the fusion Evaluator which can be found here: https://github.com/Sage-Bionetworks/SMC-RNA-Challenge/tree/master/FusionDetection/Evaluator Let me know if that doesn't fix it.

@GinnyAquarius
Copy link
Author

Thank you, the problem is fixed, but now I receive no thing after running neither evaluateFusionDet nor evaluateFusionQuant. Which kind of result is expected in return?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants