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.env.example
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.env.example
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# Connection URIs
# ===============
# These environment variables are used to authenticate
# API requests. They adopt the connection URI approach
# from Airflow, which combines various fields (such as
# access token and API base endpoint) into one string.
#
# Legend:
# - The sections between angle brackets (<foo-bar>) are
# placeholders that should be replaced with values.
# When replacing values, omit the angle brackets.
# - The section between square brackets ([/?foo=<bar>])
# are optional sections. If they are included, the
# placeholders still need to be replaced with values.
# - Values should be percent/URL-encoded prior to being
# included in the connection URI. Do not URL-encode
# the entire URI because some special characters must
# remain untouched for parsing (such as '@' and ':').
# Synapse credentials
# -------------------
# <access-token>: Replace with a Synapse personal access
# token (PAT), which can be generated here:
# https://www.synapse.org/#!PersonalAccessTokens
#
# IMPORTANT: The ':' and '@' characters before and after
# the access token are required. Do not omit them.
#
# Examples:
# export SYNAPSE_CONNECTION_URI=syn://:<access-token>@
# export SYNAPSE_CONNECTION_URI=syn://:eyJ0[...]QP7g@
# SevenBridges credentials
# ------------------------
# <access-token>: Replace with your authentication token,
# which can be accessed under the Developer menu.
# <api-base-endpoint>: Replace with the API base endpoint
# for the SevenBridges platform that you are using. Check
# `SevenBridgesClientFactory.API_ENDPOINTS` for valid values.
# You should omit the protocol (https://) from the value.
# <project-id>: Replace with your project ID, which consists
# of the project owner's username following by the project
# name: <project-id> = <username>/<project-name>.
#
# IMPORTANT: The ':' and '@' characters before and after
# the access token are required. Do not omit them.
#
# Structure:
# export SEVENBRIDGES_CONNECTION_URI=sbg://:<access-token>@<api-base-endpoint>[/?project=<project-id>]
# Examples:
# export SEVENBRIDGES_CONNECTION_URI=sbg://:f560[...][email protected]/v2
# export SEVENBRIDGES_CONNECTION_URI=sbg://:f560[...][email protected]/v2/?project=bgrande/sandbox
# Nextflow Tower credentials
# --------------------------
# <access-token>: Replace with your access token,
# which can be created using the "Your token" dashboard
# under your user/avatar menu at the top-right in Tower.
# <api-base-endpoint>: Replace with the API base endpoint
# for the Nextflow Tower platform that you are using.
# You should omit the protocol (https://) from the value.
# <workspace>: Replace with your fully-qualified workspace name,
# which consists of the workspace prefixed by the organization
# name (separated by a forward slash).
#
# IMPORTANT: The ':' and '@' characters before and after
# the access token are required. Do not omit them.
#
# Structure:
# export NEXTFLOWTOWER_CONNECTION_URI=tower://:<access-token>@<api-base-endpoint>[/?workspace=<organization-name>/<workspace-name>]
# Examples:
# export NEXTFLOWTOWER_CONNECTION_URI=tower://:eyJ0[...][email protected]
# export NEXTFLOWTOWER_CONNECTION_URI=tower://:eyJ0[...][email protected]/api/?workspace=sage-bionetworks/example-project
# export NEXTFLOWTOWER_CONNECTION_URI=tower://:eyJ0[...][email protected]/api/?workspace=sage-bionetworks/example-dev-project