From 1a38f45c278a60b637464f24df9db848bc977fe2 Mon Sep 17 00:00:00 2001
From: danlu1 <dan.lu@sagebase.org>
Date: Mon, 25 Nov 2024 23:09:18 +0000
Subject: [PATCH] remove sample_class_filter function

---
 genie/database_to_staging.py | 18 ------------------
 1 file changed, 18 deletions(-)

diff --git a/genie/database_to_staging.py b/genie/database_to_staging.py
index 78acd297..d8edd578 100644
--- a/genie/database_to_staging.py
+++ b/genie/database_to_staging.py
@@ -501,24 +501,6 @@ def seq_date_filter(clinicalDf, processingDate, consortiumReleaseCutOff):
     return removeSeqDateSamples
 
 
-def sample_class_filter(clinical_df: pd.DataFrame) -> list:
-    """Filter samples by SAMPLE_CLASS
-
-    Args:
-        clinical_df (pd.DataFrame): Clinical dataframe
-
-    Returns:
-        list: List of samples to filter out
-    """
-    if clinical_df.get("SAMPLE_CLASS") is not None:
-        remove_samples = clinical_df["SAMPLE_ID"][
-            clinical_df["SAMPLE_CLASS"] == "cfDNA"
-        ].tolist()
-    else:
-        remove_samples = []
-    return remove_samples
-
-
 # TODO: Add to transform.py
 def mutation_in_cis_filter(
     syn,