From f0960a782ba8c867ddf24e3747650f72c48be9a3 Mon Sep 17 00:00:00 2001 From: Anthony Williams Date: Wed, 12 Jul 2023 12:49:09 -0700 Subject: [PATCH] Update schem configs (#556) * Remove schematic_config.yml from .github * Use example data model in schematic_config.ym --- .github/schematic_config.yml | 42 ------------------------------------ schematic_config.yml | 4 +--- 2 files changed, 1 insertion(+), 45 deletions(-) delete mode 100644 .github/schematic_config.yml diff --git a/.github/schematic_config.yml b/.github/schematic_config.yml deleted file mode 100644 index 01f46044..00000000 --- a/.github/schematic_config.yml +++ /dev/null @@ -1,42 +0,0 @@ -# During the github workflow to auto deploy the app -# This config file will be used to overwrite the config.yml in the schematic folder -# -# Please modify the configuration values based on your project - -# Do not change the 'definitions' section unless you know what you're doing -definitions: - synapse_config: '.synapseConfig' - creds_path: 'credentials.json' - token_pickle: 'token.pickle' - service_acct_creds: 'schematic_service_account_creds.json' - -synapse: - master_fileview: 'syn20446927' # fileview of project with datasets on Synapse - manifest_folder: 'manifests' # manifests will be downloaded to this folder - manifest_filename: 'synapse_storage_manifest.csv' # name of the manifest file in the project dataset - token_creds: 'syn23643259' # synapse ID of credentials.json file - service_acct_creds: 'syn25171627' # synapse ID of service_account_creds.json file - -manifest: - title: 'Patient Manifest' # title of metadata manifest file - data_type: 'Patient' # component or data type from the data model - -model: - input: - download_url: 'https://raw.githubusercontent.com/ncihtan/data-models/main/HTAN.model.jsonld' # url to download JSON-LD data model - location: 'data-models/HTAN.model.jsonld' # path to JSON-LD data model - file_type: 'local' # only type "local" is supported currently - -style: - google_manifest: - req_bg_color: - red: 0.9215 - green: 0.9725 - blue: 0.9803 - opt_bg_color: - red: 1.0 - green: 1.0 - blue: 0.9019 - master_template_id: '1LYS5qE4nV9jzcYw5sXwCza25slDfRA1CIg3cs-hCdpU' - strict_validation: true - diff --git a/schematic_config.yml b/schematic_config.yml index fd602f0c..54ca0a82 100644 --- a/schematic_config.yml +++ b/schematic_config.yml @@ -20,7 +20,7 @@ manifest: - Patient model: input: - download_url: https://raw.githubusercontent.com/mc2-center/data-models/main/mc2.model.jsonld + download_url: https://raw.githubusercontent.com/Sage-Bionetworks/data-models/main/example.model.jsonld location: data-models/example.model.jsonld file_type: local style: @@ -35,5 +35,3 @@ style: blue: 0.9019 master_template_id: 1LYS5qE4nV9jzcYw5sXwCza25slDfRA1CIg3cs-hCdpU strict_validation: yes -api: - type: reticulate