From 97b71ba0080e2fc971cf10ffe3b3aa143b1e2c06 Mon Sep 17 00:00:00 2001 From: "Jessica Vera, Ph.D." <56414911+jmvera255@users.noreply.github.com> Date: Mon, 6 Jan 2025 11:07:32 -0600 Subject: [PATCH] VEOIBD staging test (#236) * VEOIBD config mods to try and resolve DCA internal server error * testing staging DCA deployment before new schematic version to production by 1/10 --- VEOIBD/dca-template-config.json | 12 ++++++------ VEOIBD/dca_config.json | 19 +++++++++++-------- 2 files changed, 17 insertions(+), 14 deletions(-) diff --git a/VEOIBD/dca-template-config.json b/VEOIBD/dca-template-config.json index 1a7fe4d..4982874 100644 --- a/VEOIBD/dca-template-config.json +++ b/VEOIBD/dca-template-config.json @@ -6,16 +6,16 @@ "type": "record" }, { - "display_name": "Biospecimen Metadata Template", - "schema_name": "BiospecimenMetadataTemplate", + "display_name": "Medication History Metadata Template", + "schema_name": "MedicationHistoryMetadataTemplate", "type": "record" }, { - "display_name": "scRNAseq Assay Template", - "schema_name": "ScRNASeqAssayTemplate", - "type": "file" + "display_name": "Biospecimen Metadata Template", + "schema_name": "BiospecimenMetadataTemplate", + "type": "record" } ], - "service_version": "v23.1.1", + "service_version": "", "schema_version": "" } diff --git a/VEOIBD/dca_config.json b/VEOIBD/dca_config.json index 5eb4332..88e160e 100644 --- a/VEOIBD/dca_config.json +++ b/VEOIBD/dca_config.json @@ -3,12 +3,12 @@ "name": "VEOIBD", "synapse_asset_view": "syn51397378", "data_model_url": "https://raw.githubusercontent.com/VEOIBD/data_models/main/veoibd.data.model.jsonld", - "data_model_info": "", - "template_menu_config_file": "https://raw.githubusercontent.com/Sage-Bionetworks/data_curator_config/staging/VEOIBD/dca-template-config.json", + "data_model_info": "https://veoibd.github.io/data_models/", + "template_menu_config_file": "https://raw.githubusercontent.com/Sage-Bionetworks/data_curator_config/prod/VEOIBD/dca-template-config.json", "logo_location": "https://raw.githubusercontent.com/Sage-Bionetworks/data_curator_config/prod/VEOIBD/VEOIBD Logo.png", "logo_link": "https://veoibd.org", - "dcc_help_link": "", - "portal_help_link": "" + "dcc_help_link": "https://dca-docs.scrollhelp.site/DCA/Working-version/VEOIBD/?l=en", + "portal_help_link": "https://www.synapse.org/Synapse:syn29377188/wiki/619107" }, "dca": { "use_compliance_dashboard": false, @@ -18,20 +18,23 @@ }, "schematic": { "global": { - "data_model_labels": "class_label" + "data_model_labels" : "class_label" }, "manifest_generate": { "output_format": "excel", "use_annotations": false }, "model_validate": { - "restrict_rules": true + "restrict_rules": false, + "enable_cross_manifest_validation": false }, "model_submit": { - "use_schema_labels": true, + "table_column_names": "display_label", "table_manipulation": "replace", + "annotation_keys": "display_label", "manifest_record_type": "file_only", - "hide_blanks": false + "hide_blanks": false, + "file_annotations_upload": true } } }