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["pytest-mypy"] [extras] api = ["Flask", "Flask-Cors", "Jinja2", "connexion", "flask-opentracing", "jaeger-client", "pyopenssl"] @@ -4949,4 +5038,4 @@ aws = ["uWSGI"] [metadata] lock-version = "2.0" python-versions = ">=3.9.0,<3.11" -content-hash = "450ff82615a78cd55b7c526f314898aa38e3186810f2e465d02117ea4fb9d10b" +content-hash = "3d9d2fe8fa5fa8ef6328133f3b510bd5a6ec42632b3972442223093bfeaf59b8" diff --git a/pyproject.toml b/pyproject.toml index 9e601371c..7b988c572 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -54,7 +54,7 @@ pygsheets = "^2.0.4" PyYAML = "^6.0.0" rdflib = "^6.0.0" setuptools = "^66.0.0" -synapseclient = "4.4.0" +synapseclient = "4.4.1" tenacity = "^8.0.1" toml = "^0.10.2" great-expectations = "^0.15.0" @@ -78,6 +78,7 @@ asyncio = "^3.4.3" pytest-asyncio = "^0.23.7" jaeger-client = {version = "^4.8.0", optional = true} flask-opentracing = {version="^2.0.0", optional = true} +PyJWT = "^2.9.0" [tool.poetry.extras] api = ["connexion", "Flask", "Flask-Cors", "Jinja2", "pyopenssl", "jaeger-client", "flask-opentracing"] diff --git a/schematic_api/api/openapi/api.yaml b/schematic_api/api/openapi/api.yaml index 15a3540d1..91a4989ee 100644 --- a/schematic_api/api/openapi/api.yaml +++ b/schematic_api/api/openapi/api.yaml @@ -15,7 +15,7 @@ components: type: http scheme: bearer bearerFormat: JWT - x-bearerInfoFunc: schematic_api.api.security_controller_.info_from_bearerAuth + x-bearerInfoFunc: schematic_api.api.security_controller.info_from_bearer_auth # TO DO: refactor query parameters and remove access_token paths: diff --git a/schematic_api/api/security_controller.py b/schematic_api/api/security_controller.py new file mode 100644 index 000000000..33cc4ad76 --- /dev/null +++ b/schematic_api/api/security_controller.py @@ -0,0 +1,47 @@ +import logging +from typing import Dict, Union + +from jwt import PyJWKClient, decode +from jwt.exceptions import PyJWTError +from synapseclient import Synapse + +from schematic.configuration.configuration import CONFIG + +logger = logging.getLogger(__name__) + +syn = Synapse( + configPath=CONFIG.synapse_configuration_path, + cache_client=False, +) +jwks_client = PyJWKClient( + uri=syn.authEndpoint + "/oauth2/jwks", headers=syn._generate_headers() +) + + +def info_from_bearer_auth(token: str) -> Dict[str, Union[str, int]]: + """ + Authenticate user using bearer token. The token claims are decoded and returned. + + Example from: + + + Args: + token (str): Bearer token. + + Returns: + dict: Decoded token information. + """ + try: + signing_key = jwks_client.get_signing_key_from_jwt(token) + data = decode( + jwt=token, + key=signing_key.key, + algorithms=[signing_key.algorithm_name], + options={"verify_aud": False}, + ) + + return data + except PyJWTError: + logger.exception("Error decoding authentication token") + # When the return type is None the web framework will return a 401 OAuthResponseProblem exception + return None diff --git a/schematic_api/api/security_controller_.py b/schematic_api/api/security_controller_.py deleted file mode 100644 index fbde596bb..000000000 --- a/schematic_api/api/security_controller_.py +++ /dev/null @@ -1,14 +0,0 @@ -from typing import List - - -def info_from_bearerAuth(token): - """ - Check and retrieve authentication information from custom bearer token. - Returned value will be passed in 'token_info' parameter of your operation function, if there is one. - 'sub' or 'uid' will be set in 'user' parameter of your operation function, if there is one. - :param token Token provided by Authorization header - :type token: str - :return: Decoded token information or None if token is invalid - :rtype: dict | None - """ - return {"uid": "user_id"} diff --git a/tests/conftest.py b/tests/conftest.py index 6ce21df5d..f580a08c9 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -1,4 +1,5 @@ """Fixtures and helpers for use across all tests""" +import configparser import logging import os import shutil @@ -8,7 +9,7 @@ import pytest from dotenv import load_dotenv -from schematic.configuration.configuration import CONFIG +from schematic.configuration.configuration import CONFIG, Configuration from schematic.models.metadata import MetadataModel from schematic.schemas.data_model_graph import DataModelGraph, DataModelGraphExplorer from schematic.schemas.data_model_parser import DataModelParser @@ -152,6 +153,19 @@ def DMGE(helpers: Helpers) -> DataModelGraphExplorer: return dmge +@pytest.fixture(scope="class") +def syn_token(config: Configuration): + synapse_config_path = config.synapse_configuration_path + config_parser = configparser.ConfigParser() + config_parser.read(synapse_config_path) + # try using synapse access token + if "SYNAPSE_ACCESS_TOKEN" in os.environ: + token = os.environ["SYNAPSE_ACCESS_TOKEN"] + else: + token = config_parser["authentication"]["authtoken"] + return token + + def metadata_model(helpers, data_model_labels): metadata_model = MetadataModel( inputMModelLocation=helpers.get_data_path("example.model.jsonld"), diff --git a/tests/integration/test_security_controller.py b/tests/integration/test_security_controller.py new file mode 100644 index 000000000..43a4748a4 --- /dev/null +++ b/tests/integration/test_security_controller.py @@ -0,0 +1,59 @@ +import jwt +from cryptography.hazmat.backends import default_backend +from cryptography.hazmat.primitives.asymmetric import rsa +from pytest import LogCaptureFixture + +from schematic_api.api.security_controller import info_from_bearer_auth + + +class TestSecurityController: + def test_valid_synapse_token(self, syn_token: str) -> None: + # GIVEN a valid synapse token + assert syn_token is not None + + # WHEN the token is decoded + decoded_token = info_from_bearer_auth(syn_token) + + # THEN the decoded claims are a dictionary + assert isinstance(decoded_token, dict) + assert "sub" in decoded_token + assert decoded_token["sub"] is not None + assert "token_type" in decoded_token + assert decoded_token["token_type"] is not None + + def test_invalid_synapse_signing_key(self, caplog: LogCaptureFixture) -> None: + # GIVEN an invalid synapse token + private_key = rsa.generate_private_key( + public_exponent=65537, key_size=2048, backend=default_backend() + ) + + random_token = jwt.encode( + payload={"sub": "random"}, key=private_key, algorithm="RS256" + ) + + # WHEN the token is decoded + decoded_token = info_from_bearer_auth(random_token) + + # THEN nothing is returned + assert decoded_token is None + + # AND an error is logged + assert ( + "jwt.exceptions.PyJWKClientError: Unable to find a signing key that matches:" + in caplog.text + ) + + def test_invalid_synapse_token_not_enough_parts( + self, caplog: LogCaptureFixture + ) -> None: + # GIVEN an invalid synapse token + random_token = "invalid token" + + # WHEN the token is decoded + decoded_token = info_from_bearer_auth(random_token) + + # THEN nothing is returned + assert decoded_token is None + + # AND an error is logged + assert "jwt.exceptions.DecodeError: Not enough segments" in caplog.text diff --git a/tests/test_api.py b/tests/test_api.py index 6ce515622..3b80b3964 100644 --- a/tests/test_api.py +++ b/tests/test_api.py @@ -1,4 +1,3 @@ -import configparser import json import logging import os @@ -100,19 +99,6 @@ def get_MockComponent_attribute() -> Generator[str, None, None]: yield MockComponent_attribute -@pytest.fixture(scope="class") -def syn_token(config: Configuration): - synapse_config_path = config.synapse_configuration_path - config_parser = configparser.ConfigParser() - config_parser.read(synapse_config_path) - # try using synapse access token - if "SYNAPSE_ACCESS_TOKEN" in os.environ: - token = os.environ["SYNAPSE_ACCESS_TOKEN"] - else: - token = config_parser["authentication"]["authtoken"] - return token - - @pytest.fixture def request_headers(syn_token: str) -> Dict[str, str]: headers = {"Authorization": "Bearer " + syn_token}