diff --git a/taca/analysis/analysis_element.py b/taca/analysis/analysis_element.py index 20bc0c80..189cf01d 100755 --- a/taca/analysis/analysis_element.py +++ b/taca/analysis/analysis_element.py @@ -6,8 +6,6 @@ from taca.element.Element_Runs import Aviti_Run from taca.utils.config import CONFIG -from taca.utils import statusdb - logger = logging.getLogger(__name__) diff --git a/taca/analysis/cli.py b/taca/analysis/cli.py index 2e433a4c..131e78e0 100644 --- a/taca/analysis/cli.py +++ b/taca/analysis/cli.py @@ -3,8 +3,7 @@ import click from taca.analysis import analysis as an -from taca.analysis import analysis_nanopore -from taca.analysis import analysis_element +from taca.analysis import analysis_element, analysis_nanopore @click.group() diff --git a/taca/element/Element_Runs.py b/taca/element/Element_Runs.py index a86e7d8e..b3888c55 100644 --- a/taca/element/Element_Runs.py +++ b/taca/element/Element_Runs.py @@ -1,6 +1,6 @@ +import json import logging import os -import json from datetime import datetime from taca.utils import misc @@ -63,7 +63,7 @@ def start_demux(self): with chdir(self.run_dir): cmd = self.generate_demux_command() misc.call_external_command_detached( - cmd, with_log_files=True, prefix=f"demux_" + cmd, with_log_files=True, prefix="demux_" ) logger.info( "Bases2Fastq conversion and demultiplexing "