From eaf98283474a978c17c2324368828b24af3da695 Mon Sep 17 00:00:00 2001 From: kedhammar Date: Fri, 16 Aug 2024 16:00:30 +0200 Subject: [PATCH 1/2] update anglerfish command used --- taca/nanopore/ONT_run_classes.py | 2 ++ 1 file changed, 2 insertions(+) diff --git a/taca/nanopore/ONT_run_classes.py b/taca/nanopore/ONT_run_classes.py index 1088c7e9..fa55d013 100644 --- a/taca/nanopore/ONT_run_classes.py +++ b/taca/nanopore/ONT_run_classes.py @@ -530,10 +530,12 @@ def run_anglerfish(self): anglerfish_command = [ self.anglerfish_path, + "run", f"--samplesheet {self.anglerfish_samplesheet}", f"--out_fastq {self.run_abspath}", f"--run_name {anglerfish_run_name}", f"--threads {n_threads}", + "--max_distance 1", "--lenient", "--skip_demux", ] From 12d13ed1f5d395c1b9af2c84dc9123977de0677b Mon Sep 17 00:00:00 2001 From: kedhammar Date: Fri, 16 Aug 2024 16:03:19 +0200 Subject: [PATCH 2/2] bump vlog --- VERSIONLOG.md | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/VERSIONLOG.md b/VERSIONLOG.md index 73323deb..d9ee5acf 100644 --- a/VERSIONLOG.md +++ b/VERSIONLOG.md @@ -1,5 +1,9 @@ # TACA Version Log +## 20240816.1 + +Update command used to run Anglerfish. + ## 20240705.1 Add section header in samplesheet for run folder transfer