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We currently use agilents sureselect per default for calculating hs_metrics. hsmetrics calculations will fail for non-human genomes since the sequence dictionaries differ (i.e. chromosome lists):
Caused by: net.sf.samtools.util.SequenceUtil$SequenceListsDifferException: Sequence dictionaries are not the same size (1, 93)
Suggested solutions:
run hs_metrics manually for relevant samples for now
put target files in directory structure in which genome can be deduced, and if genome_build differs, don't run hs_metrics
The text was updated successfully, but these errors were encountered:
We currently use agilents sureselect per default for calculating hs_metrics. hsmetrics calculations will fail for non-human genomes since the sequence dictionaries differ (i.e. chromosome lists):
Caused by: net.sf.samtools.util.SequenceUtil$SequenceListsDifferException: Sequence dictionaries are not the same size (1, 93)
Suggested solutions:
run hs_metrics manually for relevant samples for now
put target files in directory structure in which genome can be deduced, and if genome_build differs, don't run hs_metrics
The text was updated successfully, but these errors were encountered: