From 05d37d48f06cfc701d7c7ff22274cf8f907eb173 Mon Sep 17 00:00:00 2001 From: kedhammar Date: Mon, 30 Sep 2024 16:44:26 +0200 Subject: [PATCH] bugfix --- scripts/generate_aviti_run_manifest.py | 2 ++ 1 file changed, 2 insertions(+) diff --git a/scripts/generate_aviti_run_manifest.py b/scripts/generate_aviti_run_manifest.py index ab94ccf9..cf9fe732 100644 --- a/scripts/generate_aviti_run_manifest.py +++ b/scripts/generate_aviti_run_manifest.py @@ -192,6 +192,8 @@ def get_manifests(process: Process, manifest_root_name: str) -> list[tuple[str, # Assume long idx2 from recipe + no idx2 from label means idx2 is UMI if int(process.udf.get("Index read 2", 0)) > 12: row["Index2"] = "N" * int(process.udf["Index read 2"]) + else: + row["Index2"] = "" row["Lane"] = lane row["Project"] = project row["Recipe"] = seq_setup