From 5b0ca7b022e265f5aadf23f0c1321986658fd707 Mon Sep 17 00:00:00 2001 From: kedhammar Date: Tue, 27 Aug 2024 11:09:23 +0200 Subject: [PATCH] sort samples section by name and lane --- scripts/generate_aviti_run_manifest.py | 1 + 1 file changed, 1 insertion(+) diff --git a/scripts/generate_aviti_run_manifest.py b/scripts/generate_aviti_run_manifest.py index 3d6dd2e2..16991ae5 100644 --- a/scripts/generate_aviti_run_manifest.py +++ b/scripts/generate_aviti_run_manifest.py @@ -140,6 +140,7 @@ def get_samples_section(process: Process) -> str: all_rows.extend(lane_rows) df = pd.DataFrame(all_rows) + df.sort_values(by=["SampleName", "Lane"], inplace=True) samples_section = f"[SAMPLES]\n{df.to_csv(index=None, header=True)}"