From 89d3a404610cdae249effdcbfa76b9e7bb5e2c0b Mon Sep 17 00:00:00 2001
From: kedhammar <alfred.kedhammar@scilifelab.se>
Date: Fri, 22 Dec 2023 16:33:51 +0100
Subject: [PATCH] try simplified ci and expanded reqs

---
 .github/workflows/lint-code.yml | 13 +++++--------
 requirements.txt                | 33 +++++++++++++++++----------------
 2 files changed, 22 insertions(+), 24 deletions(-)

diff --git a/.github/workflows/lint-code.yml b/.github/workflows/lint-code.yml
index 01ab0d55..45560a19 100644
--- a/.github/workflows/lint-code.yml
+++ b/.github/workflows/lint-code.yml
@@ -67,19 +67,16 @@ jobs:
         uses: actions/setup-python@v4
         with:
           python-version: '3.10'
+
       - name: Install pipreqs
         run: pip install pipreqs
-
-      # Install packages that are not found on PyPI
-      - name: Install postgreSQL
-        run: sudo apt-get install postgresql
-      - name: Install flowcell_parser
-        run: pip install git+https://github.com/SciLifeLab/flowcell_parser.git
-      - name: Install scilifelab_parsers
-        run: pip install git+https://github.com/SciLifeLab/scilifelab_parsers.git
+      
+      - name: Install requirements
+        run: pip install -r requirements.txt
 
       - name: Run pipreqs
         run: pipreqs --savepath pipreqs.txt
+        
       - name: Compare requirements
         run: |
           echo "=== pipreqs.txt contents: ==="
diff --git a/requirements.txt b/requirements.txt
index 2dbcf49f..f4dfdcb5 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -1,16 +1,17 @@
-CouchDB==1.2
-flowcell_parser==1.0.4
-genologics==1.0.0
-google_api_python_client==2.111.0
-httplib2==0.22.0
-interop==1.3.1
-Markdown==3.5.1
-numpy==1.26.2
-oauth2client==4.1.3
-pandas==2.1.4
-protobuf==4.25.1
-psycopg2==2.9.9
-PyYAML==6.0.1
-Requests==2.31.0
-setuptools==65.5.0
-tabulate==0.9.0
+CouchDB
+flowcell_parser @ git+https://github.com/SciLifeLab/flowcell_parser
+genologics
+google_api_python_client
+httplib2
+interop
+Markdown
+numpy
+oauth2client
+pandas
+protobuf
+psycopg2
+PyYAML
+Requests
+scilifelab_parsers @ git+https://github.com/SciLifeLab/scilifelab_parsers
+setuptools
+tabulate
\ No newline at end of file