From 389a479002a9430185a1565f2237e2628eab2a6a Mon Sep 17 00:00:00 2001 From: "Documenter.jl" Date: Sat, 5 Oct 2024 14:16:39 +0000 Subject: [PATCH] build based on 538af2e --- dev/.documenter-siteinfo.json | 2 +- dev/assets/Manifest.toml | 143 +++++++++++++++++++++++----------- dev/index.html | 46 ++++++----- dev/objects.inv | 2 +- dev/tutorial/index.html | 2 +- 5 files changed, 124 insertions(+), 71 deletions(-) diff --git a/dev/.documenter-siteinfo.json b/dev/.documenter-siteinfo.json index cb528fa..1ca536f 100644 --- a/dev/.documenter-siteinfo.json +++ b/dev/.documenter-siteinfo.json @@ -1 +1 @@ -{"documenter":{"julia_version":"1.10.5","generation_timestamp":"2024-10-04T08:55:57","documenter_version":"1.7.0"}} \ No newline at end of file +{"documenter":{"julia_version":"1.10.5","generation_timestamp":"2024-10-05T14:16:36","documenter_version":"1.7.0"}} \ No newline at end of file diff --git a/dev/assets/Manifest.toml b/dev/assets/Manifest.toml index 33c87c8..24f6fc2 100644 --- a/dev/assets/Manifest.toml +++ b/dev/assets/Manifest.toml @@ -132,6 +132,18 @@ git-tree-sha1 = "f21cfd4950cb9f0587d5067e69405ad2acd27b87" uuid = "62783981-4cbd-42fc-bca8-16325de8dc4b" version = "0.1.6" +[[deps.BlockArrays]] +deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra"] +git-tree-sha1 = "d434647f798823bcae510aee0bc0401927f64391" +uuid = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" +version = "1.1.1" + + [deps.BlockArrays.extensions] + BlockArraysBandedMatricesExt = "BandedMatrices" + + [deps.BlockArrays.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + [[deps.CPUSummary]] deps = ["CpuId", "IfElse", "PrecompileTools", "Static"] git-tree-sha1 = "5a97e67919535d6841172016c9530fd69494e5ec" @@ -148,7 +160,7 @@ version = "3.4.3" deps = ["EzXML", "MathML", "Memoize", "ModelingToolkit", "Setfield", "SymbolicUtils"] path = "/home/runner/work/CellMLToolkit.jl/CellMLToolkit.jl" uuid = "03cb29e0-1ef4-4721-aa24-cf58a006576f" -version = "2.12.0" +version = "2.13.0" [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] @@ -179,9 +191,9 @@ version = "1.0.2" [[deps.CommonMark]] deps = ["Crayons", "JSON", "PrecompileTools", "URIs"] -git-tree-sha1 = "532c4185d3c9037c0237546d817858b23cf9e071" +git-tree-sha1 = "294d62bdb4e1809302f8927abdd0b19464147fb1" uuid = "a80b9123-70ca-4bc0-993e-6e3bcb318db6" -version = "0.8.12" +version = "0.8.13" [[deps.CommonSolve]] git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" @@ -234,14 +246,14 @@ uuid = "2569d6c7-a4a2-43d3-a901-331e8e4be471" version = "0.2.3" [[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "d8a9c0b6ac2d9081bf76324b39c78ca3ce4f0c98" +git-tree-sha1 = "76219f1ed5771adbb096743bff43fb5fdd4c1157" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.6" -weakdeps = ["IntervalSets", "StaticArrays"] +version = "1.5.8" +weakdeps = ["IntervalSets", "LinearAlgebra", "StaticArrays"] [deps.ConstructionBase.extensions] ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseLinearAlgebraExt = "LinearAlgebra" ConstructionBaseStaticArraysExt = "StaticArrays" [[deps.CpuId]] @@ -277,9 +289,9 @@ uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" [[deps.DiffEqBase]] deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"] -git-tree-sha1 = "6b1af0db32958b200b7b1745796432e75821bf48" +git-tree-sha1 = "ada2a9faba0e365dca3cc456b5eca94cf3887ac3" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.155.2" +version = "6.156.1" [deps.DiffEqBase.extensions] DiffEqBaseCUDAExt = "CUDA" @@ -346,9 +358,9 @@ version = "1.15.1" [[deps.DifferentiationInterface]] deps = ["ADTypes", "Compat", "LinearAlgebra", "PackageExtensionCompat"] -git-tree-sha1 = "50a19de1b366cbdcf2849dc5335bbd66e1db0dae" +git-tree-sha1 = "7e10eebf52857cd441274f74e3a172cad950437f" uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.6.1" +version = "0.6.5" [deps.DifferentiationInterface.extensions] DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" @@ -384,6 +396,17 @@ version = "0.6.1" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" +[[deps.DispatchDoctor]] +deps = ["MacroTools", "Preferences"] +git-tree-sha1 = "19eec8ee5cde1c10aa5e5e0f25d10a3b4c8f8f12" +uuid = "8d63f2c5-f18a-4cf2-ba9d-b3f60fc568c8" +version = "0.4.15" +weakdeps = ["ChainRulesCore", "EnzymeCore"] + + [deps.DispatchDoctor.extensions] + DispatchDoctorChainRulesCoreExt = "ChainRulesCore" + DispatchDoctorEnzymeCoreExt = "EnzymeCore" + [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" @@ -434,16 +457,16 @@ uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" version = "1.6.0" [[deps.DynamicPolynomials]] -deps = ["Future", "LinearAlgebra", "MultivariatePolynomials", "MutableArithmetics", "Pkg", "Reexport", "Test"] -git-tree-sha1 = "30a1848c4f4fc35d1d4bbbd125650f6a11b5bc6c" +deps = ["Future", "LinearAlgebra", "MultivariatePolynomials", "MutableArithmetics", "Reexport", "Test"] +git-tree-sha1 = "bbf1ace0781d9744cb697fb856bd2c3f6568dadb" uuid = "7c1d4256-1411-5781-91ec-d7bc3513ac07" -version = "0.5.7" +version = "0.6.0" [[deps.DynamicQuantities]] -deps = ["Compat", "PackageExtensionCompat", "Tricks"] -git-tree-sha1 = "412b25c7d99ec6b06967d315c7b29bb8e484f092" +deps = ["Compat", "DispatchDoctor", "PackageExtensionCompat", "TestItems", "Tricks"] +git-tree-sha1 = "82b3ab10e1d14cd79d813d30005d52ac3ef9ea97" uuid = "06fc5a27-2a28-4c7c-a15d-362465fb6821" -version = "0.13.2" +version = "1.1.0" [deps.DynamicQuantities.extensions] DynamicQuantitiesLinearAlgebraExt = "LinearAlgebra" @@ -463,9 +486,9 @@ uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.4" [[deps.EnzymeCore]] -git-tree-sha1 = "ee11500b17d87b22bc638e9ed8c71a7478c53d61" +git-tree-sha1 = "9c3a42611e525352e9ad5e4134ddca5c692ff209" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.8.3" +version = "0.8.4" weakdeps = ["Adapt"] [deps.EnzymeCore.extensions] @@ -608,9 +631,9 @@ version = "1.3.1" [[deps.Graphs]] deps = ["ArnoldiMethod", "Compat", "DataStructures", "Distributed", "Inflate", "LinearAlgebra", "Random", "SharedArrays", "SimpleTraits", "SparseArrays", "Statistics"] -git-tree-sha1 = "ebd18c326fa6cee1efb7da9a3b45cf69da2ed4d9" +git-tree-sha1 = "1dc470db8b1131cfc7fb4c115de89fe391b9e780" uuid = "86223c79-3864-5bf0-83f7-82e725a168b6" -version = "1.11.2" +version = "1.12.0" [[deps.HostCPUFeatures]] deps = ["BitTwiddlingConvenienceFunctions", "IfElse", "Libdl", "Static"] @@ -640,6 +663,11 @@ git-tree-sha1 = "d1b1b796e47d94588b3757fe84fbf65a5ec4a80d" uuid = "d25df0c9-e2be-5dd7-82c8-3ad0b3e990b9" version = "0.1.5" +[[deps.IntegerMathUtils]] +git-tree-sha1 = "b8ffb903da9f7b8cf695a8bead8e01814aa24b30" +uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235" +version = "0.1.2" + [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl"] git-tree-sha1 = "10bd689145d2c3b2a9844005d01087cc1194e79e" @@ -723,12 +751,6 @@ git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" version = "1.3.1" -[[deps.LabelledArrays]] -deps = ["ArrayInterface", "ChainRulesCore", "ForwardDiff", "LinearAlgebra", "MacroTools", "PreallocationTools", "RecursiveArrayTools", "StaticArrays"] -git-tree-sha1 = "e459fda6b68ea8684b3fcd513d2fd1e5130c4402" -uuid = "2ee39098-c373-598a-b85f-a56591580800" -version = "1.16.0" - [[deps.LambertW]] git-tree-sha1 = "c5ffc834de5d61d00d2b0e18c96267cffc21f648" uuid = "984bce1d-4616-540c-a9ee-88d1112d94c9" @@ -926,9 +948,9 @@ version = "0.1.2" [[deps.MathML]] deps = ["AbstractTrees", "DocStringExtensions", "EzXML", "IfElse", "SpecialFunctions", "Statistics", "Symbolics"] -git-tree-sha1 = "12b0736d966c45d8621e895671266f05c881dda1" +git-tree-sha1 = "96be2ef58090a043b6da60c9784f80475a52638f" uuid = "abcecc63-2b08-419c-80c4-c63dca6fa478" -version = "0.1.15" +version = "0.1.16" [[deps.MaybeInplace]] deps = ["ArrayInterface", "LinearAlgebra", "MacroTools"] @@ -961,18 +983,22 @@ version = "1.2.0" uuid = "a63ad114-7e13-5084-954f-fe012c677804" [[deps.ModelingToolkit]] -deps = ["AbstractTrees", "ArrayInterface", "Combinatorics", "Compat", "ConstructionBase", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "DiffRules", "Distributed", "Distributions", "DocStringExtensions", "DomainSets", "DynamicQuantities", "ExprTools", "Expronicon", "FindFirstFunctions", "ForwardDiff", "FunctionWrappersWrappers", "Graphs", "InteractiveUtils", "JuliaFormatter", "JumpProcesses", "LabelledArrays", "Latexify", "Libdl", "LinearAlgebra", "MLStyle", "NaNMath", "NonlinearSolve", "OrderedCollections", "PrecompileTools", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "SciMLStructures", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "URIs", "UnPack", "Unitful"] -git-tree-sha1 = "9199a56fa74c0d64e0023dc99201f5a602a3890f" +deps = ["AbstractTrees", "ArrayInterface", "BlockArrays", "Combinatorics", "Compat", "ConstructionBase", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "DiffRules", "Distributed", "Distributions", "DocStringExtensions", "DomainSets", "DynamicQuantities", "ExprTools", "Expronicon", "FindFirstFunctions", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "Graphs", "InteractiveUtils", "JuliaFormatter", "JumpProcesses", "Latexify", "Libdl", "LinearAlgebra", "MLStyle", "NaNMath", "NonlinearSolve", "OrderedCollections", "PrecompileTools", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "SciMLStructures", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "URIs", "UnPack", "Unitful"] +git-tree-sha1 = "00140c3b93fbbbd317a71a65c578306d0d72b1be" uuid = "961ee093-0014-501f-94e3-6117800e7a78" -version = "9.32.0" +version = "9.41.0" [deps.ModelingToolkit.extensions] MTKBifurcationKitExt = "BifurcationKit" + MTKChainRulesCoreExt = "ChainRulesCore" MTKDeepDiffsExt = "DeepDiffs" + MTKLabelledArraysExt = "LabelledArrays" [deps.ModelingToolkit.weakdeps] BifurcationKit = "0f109fa4-8a5d-4b75-95aa-f515264e7665" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" DeepDiffs = "ab62b9b5-e342-54a8-a765-a90f495de1a6" + LabelledArrays = "2ee39098-c373-598a-b85f-a56591580800" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" @@ -1173,6 +1199,12 @@ git-tree-sha1 = "9306f6085165d270f7e3db02af26a400d580f5c6" uuid = "21216c6a-2e73-6563-6e65-726566657250" version = "1.4.3" +[[deps.Primes]] +deps = ["IntegerMathUtils"] +git-tree-sha1 = "cb420f77dc474d23ee47ca8d14c90810cafe69e7" +uuid = "27ebfcd6-29c5-5fa9-bf4b-fb8fc14df3ae" +version = "0.5.6" + [[deps.Printf]] deps = ["Unicode"] uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" @@ -1310,9 +1342,9 @@ version = "0.6.43" [[deps.SciMLBase]] deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "Expronicon", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "71857d6bab17e7ac6802d86ffcc75423b8c1d812" +git-tree-sha1 = "885904799812ed88a607c03b38e9c3a4a5b08853" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.54.0" +version = "2.55.0" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -1521,31 +1553,43 @@ version = "0.3.31" [[deps.SymbolicLimits]] deps = ["SymbolicUtils"] -git-tree-sha1 = "fb099adbd7504f1e68b4512828e9d94197a8b889" +git-tree-sha1 = "fabf4650afe966a2ba646cabd924c3fd43577fc3" uuid = "19f23fe9-fdab-4a78-91af-e7b7767979c3" -version = "0.2.1" +version = "0.2.2" [[deps.SymbolicUtils]] -deps = ["AbstractTrees", "Bijections", "ChainRulesCore", "Combinatorics", "ConstructionBase", "DataStructures", "DocStringExtensions", "DynamicPolynomials", "IfElse", "LabelledArrays", "LinearAlgebra", "MultivariatePolynomials", "NaNMath", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "TermInterface", "TimerOutputs", "Unityper"] -git-tree-sha1 = "a7ecd8fb3ee77a47ac033395069117763469c49e" +deps = ["AbstractTrees", "ArrayInterface", "Bijections", "ChainRulesCore", "Combinatorics", "ConstructionBase", "DataStructures", "DocStringExtensions", "DynamicPolynomials", "IfElse", "LinearAlgebra", "MultivariatePolynomials", "NaNMath", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "TermInterface", "TimerOutputs", "Unityper"] +git-tree-sha1 = "3927e02dc7648a45ec6aa592bcd8374094a44740" uuid = "d1185830-fcd6-423d-90d6-eec64667417b" -version = "2.1.3" +version = "3.7.1" + + [deps.SymbolicUtils.extensions] + SymbolicUtilsLabelledArraysExt = "LabelledArrays" + SymbolicUtilsReverseDiffExt = "ReverseDiff" + + [deps.SymbolicUtils.weakdeps] + LabelledArrays = "2ee39098-c373-598a-b85f-a56591580800" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" [[deps.Symbolics]] -deps = ["ADTypes", "ArrayInterface", "Bijections", "CommonWorldInvalidations", "ConstructionBase", "DataStructures", "DiffRules", "Distributions", "DocStringExtensions", "DomainSets", "DynamicPolynomials", "ForwardDiff", "IfElse", "LaTeXStrings", "LambertW", "Latexify", "Libdl", "LinearAlgebra", "LogExpFunctions", "MacroTools", "Markdown", "NaNMath", "PrecompileTools", "RecipesBase", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "SymbolicLimits", "SymbolicUtils", "TermInterface"] -git-tree-sha1 = "b13a5417865e9934d043718f644e4a67519463ce" +deps = ["ADTypes", "ArrayInterface", "Bijections", "CommonWorldInvalidations", "ConstructionBase", "DataStructures", "DiffRules", "Distributions", "DocStringExtensions", "DomainSets", "DynamicPolynomials", "IfElse", "LaTeXStrings", "LambertW", "Latexify", "Libdl", "LinearAlgebra", "LogExpFunctions", "MacroTools", "Markdown", "NaNMath", "PrecompileTools", "Primes", "RecipesBase", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "SymbolicLimits", "SymbolicUtils", "TermInterface"] +git-tree-sha1 = "6a7c7cd9bd8c051877a5a29fb597b18362dbc4e4" uuid = "0c5d862f-8b57-4792-8d23-62f2024744c7" -version = "5.36.0" +version = "6.13.1" [deps.Symbolics.extensions] + SymbolicsForwardDiffExt = "ForwardDiff" SymbolicsGroebnerExt = "Groebner" - SymbolicsLuxCoreExt = "LuxCore" - SymbolicsPreallocationToolsExt = "PreallocationTools" + SymbolicsLuxExt = "Lux" + SymbolicsNemoExt = "Nemo" + SymbolicsPreallocationToolsExt = ["PreallocationTools", "ForwardDiff"] SymbolicsSymPyExt = "SymPy" [deps.Symbolics.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" Groebner = "0b43b601-686d-58a3-8a1c-6623616c7cd4" - LuxCore = "bb33d45b-7691-41d6-9220-0943567d0623" + Lux = "b2108857-7c20-44ae-9111-449ecde12c47" + Nemo = "2edaba10-b0f1-5616-af89-8c11ac63239a" PreallocationTools = "d236fae5-4411-538c-8e31-a6e3d9e00b46" SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" @@ -1572,14 +1616,19 @@ uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" version = "1.10.0" [[deps.TermInterface]] -git-tree-sha1 = "6f0cee95e74d1f6891ba6b35b8b219fd3d11b567" +git-tree-sha1 = "d673e0aca9e46a2f63720201f55cc7b3e7169b16" uuid = "8ea1fca8-c5ef-4a55-8b96-4e9afe9c9a3c" -version = "0.4.1" +version = "2.0.0" [[deps.Test]] deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" +[[deps.TestItems]] +git-tree-sha1 = "42fd9023fef18b9b78c8343a4e2f3813ffbcefcb" +uuid = "1c621080-faea-4a02-84b6-bbd5e436b8fe" +version = "1.0.0" + [[deps.ThreadingUtilities]] deps = ["ManualMemory"] git-tree-sha1 = "eda08f7e9818eb53661b3deb74e3159460dfbc27" diff --git a/dev/index.html b/dev/index.html index d1e0872..1aa3668 100644 --- a/dev/index.html +++ b/dev/index.html @@ -10,7 +10,7 @@ X = map(x -> x[1], sol.u) Z = map(x -> x[3], sol.u) plot(X, Z)

Reproducibility

The documentation of this SciML package was built using these direct dependencies,
Status `~/work/CellMLToolkit.jl/CellMLToolkit.jl/docs/Project.toml`
-  [03cb29e0] CellMLToolkit v2.12.0 `~/work/CellMLToolkit.jl/CellMLToolkit.jl`
+  [03cb29e0] CellMLToolkit v2.13.0 `~/work/CellMLToolkit.jl/CellMLToolkit.jl`
   [e30172f5] Documenter v1.7.0
and using this machine and Julia version.
Julia Version 1.10.5
 Commit 6f3fdf7b362 (2024-08-27 14:19 UTC)
 Build Info:
@@ -33,14 +33,15 @@
   [4c555306] ArrayLayouts v1.10.3
   [e2ed5e7c] Bijections v0.1.9
   [62783981] BitTwiddlingConvenienceFunctions v0.1.6
+  [8e7c35d0] BlockArrays v1.1.1
   [2a0fbf3d] CPUSummary v0.2.6
   [00ebfdb7] CSTParser v3.4.3
-  [03cb29e0] CellMLToolkit v2.12.0 `~/work/CellMLToolkit.jl/CellMLToolkit.jl`
+  [03cb29e0] CellMLToolkit v2.13.0 `~/work/CellMLToolkit.jl/CellMLToolkit.jl`
   [d360d2e6] ChainRulesCore v1.25.0
   [fb6a15b2] CloseOpenIntervals v0.1.13
   [944b1d66] CodecZlib v0.7.6
   [861a8166] Combinatorics v1.0.2
-  [a80b9123] CommonMark v0.8.12
+  [a80b9123] CommonMark v0.8.13
   [38540f10] CommonSolve v0.2.4
   [bbf7d656] CommonSubexpressions v0.3.1
   [f70d9fcc] CommonWorldInvalidations v1.0.0
@@ -48,26 +49,27 @@
   [b152e2b5] CompositeTypes v0.1.4
   [a33af91c] CompositionsBase v0.1.2
   [2569d6c7] ConcreteStructs v0.2.3
-⌅ [187b0558] ConstructionBase v1.5.6
+  [187b0558] ConstructionBase v1.5.8
   [adafc99b] CpuId v0.3.1
   [a8cc5b0e] Crayons v4.1.1
   [9a962f9c] DataAPI v1.16.0
   [864edb3b] DataStructures v0.18.20
   [e2d170a0] DataValueInterfaces v1.0.0
-  [2b5f629d] DiffEqBase v6.155.2
-  [459566f4] DiffEqCallbacks v3.9.1
+  [2b5f629d] DiffEqBase v6.156.1
+⌅ [459566f4] DiffEqCallbacks v3.9.1
   [77a26b50] DiffEqNoiseProcess v5.23.0
   [163ba53b] DiffResults v1.1.0
   [b552c78f] DiffRules v1.15.1
-  [a0c0ee7d] DifferentiationInterface v0.6.1
+  [a0c0ee7d] DifferentiationInterface v0.6.5
+  [8d63f2c5] DispatchDoctor v0.4.15
   [31c24e10] Distributions v0.25.112
   [ffbed154] DocStringExtensions v0.9.3
   [e30172f5] Documenter v1.7.0
   [5b8099bc] DomainSets v0.7.14
-⌅ [7c1d4256] DynamicPolynomials v0.5.7
-⌅ [06fc5a27] DynamicQuantities v0.13.2
+  [7c1d4256] DynamicPolynomials v0.6.0
+  [06fc5a27] DynamicQuantities v1.1.0
   [4e289a0a] EnumX v1.0.4
-  [f151be2c] EnzymeCore v0.8.3
+  [f151be2c] EnzymeCore v0.8.4
   [e2ba6199] ExprTools v0.1.10
 ⌅ [6b7a57c9] Expronicon v0.8.5
   [8f5d6c58] EzXML v1.2.0
@@ -85,12 +87,13 @@
   [46192b85] GPUArraysCore v0.1.6
   [d7ba0133] Git v1.3.1
   [c27321d9] Glob v1.3.1
-  [86223c79] Graphs v1.11.2
+  [86223c79] Graphs v1.12.0
   [3e5b6fbb] HostCPUFeatures v0.1.17
   [34004b35] HypergeometricFunctions v0.3.24
   [b5f81e59] IOCapture v0.2.5
   [615f187c] IfElse v0.1.1
   [d25df0c9] Inflate v0.1.5
+  [18e54dd8] IntegerMathUtils v0.1.2
   [8197267c] IntervalSets v0.7.10
   [3587e190] InverseFunctions v0.1.17
   [92d709cd] IrrationalConstants v0.2.2
@@ -102,8 +105,7 @@
   [ef3ab10e] KLU v0.6.0
   [ba0b0d4f] Krylov v0.9.6
   [b964fa9f] LaTeXStrings v1.3.1
-  [2ee39098] LabelledArrays v1.16.0
-  [984bce1d] LambertW v0.4.6
+⌅ [984bce1d] LambertW v0.4.6
   [23fbe1c1] Latexify v0.16.5
   [10f19ff3] LayoutPointers v0.1.17
   [0e77f7df] LazilyInitializedFields v1.2.2
@@ -116,11 +118,11 @@
   [1914dd2f] MacroTools v0.5.13
   [d125e4d3] ManualMemory v0.1.8
   [d0879d2d] MarkdownAST v0.1.2
-  [abcecc63] MathML v0.1.15
+  [abcecc63] MathML v0.1.16
   [bb5d69b7] MaybeInplace v0.1.4
   [c03570c3] Memoize v0.4.4
   [e1d29d7a] Missings v1.2.0
-⌃ [961ee093] ModelingToolkit v9.32.0
+  [961ee093] ModelingToolkit v9.41.0
   [46d2c3a1] MuladdMacro v0.2.4
   [102ac46a] MultivariatePolynomials v0.5.6
   [d8a4904e] MutableArithmetics v1.5.0
@@ -141,6 +143,7 @@
   [d236fae5] PreallocationTools v0.4.24
   [aea7be01] PrecompileTools v1.2.1
   [21216c6a] Preferences v1.4.3
+  [27ebfcd6] Primes v0.5.6
   [43287f4e] PtrArrays v1.2.1
   [1fd47b50] QuadGK v2.11.1
   [74087812] Random123 v1.7.0
@@ -156,7 +159,7 @@
   [7e49a35a] RuntimeGeneratedFunctions v0.5.13
   [94e857df] SIMDTypes v0.1.0
   [476501e8] SLEEFPirates v0.6.43
-  [0bca4576] SciMLBase v2.54.0
+  [0bca4576] SciMLBase v2.55.0
   [c0aeaf25] SciMLOperators v0.3.10
   [53ae85a6] SciMLStructures v1.5.0
   [efcf1570] Setfield v1.1.1
@@ -175,12 +178,13 @@
   [4c63d2b9] StatsFuns v1.3.2
   [7792a7ef] StrideArraysCore v0.5.7
   [2efcf032] SymbolicIndexingInterface v0.3.31
-⌃ [19f23fe9] SymbolicLimits v0.2.1
-⌅ [d1185830] SymbolicUtils v2.1.3
-⌅ [0c5d862f] Symbolics v5.36.0
+  [19f23fe9] SymbolicLimits v0.2.2
+  [d1185830] SymbolicUtils v3.7.1
+  [0c5d862f] Symbolics v6.13.1
   [3783bdb8] TableTraits v1.0.1
   [bd369af6] Tables v1.12.0
-⌅ [8ea1fca8] TermInterface v0.4.1
+  [8ea1fca8] TermInterface v2.0.0
+  [1c621080] TestItems v1.0.0
   [8290d209] ThreadingUtilities v0.5.2
   [a759f4b9] TimerOutputs v0.5.24
   [0796e94c] Tokenize v0.5.29
@@ -252,4 +256,4 @@
   [8e850b90] libblastrampoline_jll v5.11.0+0
   [8e850ede] nghttp2_jll v1.52.0+1
   [3f19e933] p7zip_jll v17.4.0+2
-Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`

You can also download the manifest file and the project file.

+Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

You can also download the manifest file and the project file.

diff --git a/dev/objects.inv b/dev/objects.inv index 2105c79..f1b9536 100644 --- a/dev/objects.inv +++ b/dev/objects.inv @@ -1,6 +1,6 @@ # Sphinx inventory version 2 # Project: CellMLToolkit.jl -# Version: 2.12.0 +# Version: 2.13.0 # The remainder of this file is compressed using zlib. xuA @ EsVq diff --git a/dev/tutorial/index.html b/dev/tutorial/index.html index 1de55b3..fc7aa57 100644 --- a/dev/tutorial/index.html +++ b/dev/tutorial/index.html @@ -36,4 +36,4 @@ prob = ODEProblem(ml, tspan; p = p) sol = solve(prob, TRBDF2(), dtmax = 1.0) V = map(x -> x[1], sol.u) -plot(sol.t, V)

ODEProblem also accepts a u0 parameter to change the initial conditions (remember u0 = list_initial_conditions(ml)).

+plot(sol.t, V)

ODEProblem also accepts a u0 parameter to change the initial conditions (remember u0 = list_initial_conditions(ml)).