From 277b5f5bd015a699d10706b831af5cc85c0d2a6f Mon Sep 17 00:00:00 2001
From: Juhan Oskar Hennoste <juhanoskar@gmail.com>
Date: Fri, 22 Dec 2023 02:22:43 +0200
Subject: [PATCH] Remove deprecated experimental methods

---
 .../java/ee/ut/dendroloj/Dendrologist.java    | 113 ------------------
 1 file changed, 113 deletions(-)

diff --git a/src/main/java/ee/ut/dendroloj/Dendrologist.java b/src/main/java/ee/ut/dendroloj/Dendrologist.java
index 0ebcde3..99d2104 100644
--- a/src/main/java/ee/ut/dendroloj/Dendrologist.java
+++ b/src/main/java/ee/ut/dendroloj/Dendrologist.java
@@ -141,119 +141,6 @@ public static void drawGraph(GraphCanvas<?> graphCanvas) {
         GraphGUI.initGenericGUI(uiScale, graph, GenericGraphLayout.autoLayout());
     }
 
-    /**
-     * <b>EXPERIMENTAL API</b>
-     * <p>
-     * Draws a graph based on the provided adjacency matrix.
-     * Negative values in the adjacency matrix are treated as missing edges.
-     *
-     * @param adjacencyMatrix graph adjacency matrix; value at [i][j] is treated as the weight of the edge from vertex i to vertex j
-     * @param labels          string labels for vertices; pass null to use vertex indices as labels
-     * @deprecated THIS API IS EXPERIMENTAL AND MAY EVENTUALLY BE REMOVED
-     */
-    @Deprecated
-    public static void drawGraph(int[][] adjacencyMatrix, String[] labels) {
-        if (isHeadless()) {
-            System.err.println("Dendrologist: Running in headless environment. Ignoring call to drawGraph.");
-            return;
-        }
-        for (var row : adjacencyMatrix) {
-            if (row.length != adjacencyMatrix.length) {
-                throw new IllegalArgumentException("Adjacency matrix is not square");
-            }
-        }
-
-        drawAdjacencyMatrixGraph(adjacencyMatrix.length, (from, to) -> {
-            int value = adjacencyMatrix[from][to];
-            return value >= 0 ? value : null;
-        }, labels);
-    }
-
-    /**
-     * <b>EXPERIMENTAL API</b>
-     * <p>
-     * Draws a graph based on the provided adjacency matrix.
-     * Infinite and NaN values in the adjacency matrix are treated as missing edges.
-     *
-     * @param adjacencyMatrix graph adjacency matrix; value at [i][j] is treated as the weight of the edge from vertex i to vertex j
-     * @param labels          string labels for vertices; pass null to use vertex indices as labels
-     * @deprecated THIS API IS EXPERIMENTAL AND MAY EVENTUALLY BE REMOVED
-     */
-    @Deprecated
-    public static void drawGraph(double[][] adjacencyMatrix, String[] labels) {
-        if (isHeadless()) {
-            System.err.println("Dendrologist: Running in headless environment. Ignoring call to drawGraph.");
-            return;
-        }
-        for (var row : adjacencyMatrix) {
-            if (row.length != adjacencyMatrix.length) {
-                throw new IllegalArgumentException("Adjacency matrix is not square");
-            }
-        }
-
-        drawAdjacencyMatrixGraph(adjacencyMatrix.length, (from, to) -> {
-            double value = adjacencyMatrix[from][to];
-            return Double.isFinite(value) ? value : null;
-        }, labels);
-    }
-
-    /**
-     * <b>EXPERIMENTAL API</b>
-     * <p>
-     * Draws a graph based on the provided adjacency matrix.
-     * Infinite and NaN values in the adjacency matrix are treated as missing edges.
-     *
-     * @param adjacencyMatrix graph adjacency matrix; value at [i][j] is treated as the weight of the edge from vertex i to vertex j
-     * @param labels          string labels for vertices; pass null to use vertex indices as labels
-     * @deprecated THIS API IS EXPERIMENTAL AND MAY EVENTUALLY BE REMOVED
-     */
-    @Deprecated
-    public static void drawGraph(float[][] adjacencyMatrix, String[] labels) {
-        if (isHeadless()) {
-            System.err.println("Dendrologist: Running in headless environment. Ignoring call to drawGraph.");
-            return;
-        }
-        for (var row : adjacencyMatrix) {
-            if (row.length != adjacencyMatrix.length) {
-                throw new IllegalArgumentException("Adjacency matrix is not square");
-            }
-        }
-
-        drawAdjacencyMatrixGraph(adjacencyMatrix.length, (from, to) -> {
-            float value = adjacencyMatrix[from][to];
-            return Float.isFinite(value) ? value : null;
-        }, labels);
-    }
-
-    private static void drawAdjacencyMatrixGraph(int vertexCount, WeightProvider weights, String[] labels) {
-        GraphCanvas<Number> graphCanvas = new GraphCanvas<>();
-        for (int i = 0; i < vertexCount; i++) {
-            graphCanvas.drawVertex(i, labels == null ? String.valueOf(i) : labels[i]);
-            Number selfWeight = weights.getWeight(i, i);
-            if (selfWeight != null && selfWeight.doubleValue() != 0.0) {
-                graphCanvas.drawEdge(i, i, selfWeight.toString());
-            }
-            for (int j = i + 1; j < vertexCount; j++) {
-                Number weight = weights.getWeight(i, j);
-                Number backwardsWeight = weights.getWeight(j, i);
-                if (Objects.equals(weight, backwardsWeight)) {
-                    if (weight != null) graphCanvas.drawEdge(i, j, weight.toString());
-                } else {
-                    if (weight != null) graphCanvas.drawDirectedEdge(i, j, weight.toString());
-                    if (backwardsWeight != null) graphCanvas.drawDirectedEdge(j, i, backwardsWeight.toString());
-                }
-
-            }
-        }
-        Graph graph = GenericGraphLayout.assembleGraph(graphCanvas);
-        GraphGUI.initGenericGUI(uiScale, graph, GenericGraphLayout.autoLayout());
-    }
-
-    @FunctionalInterface
-    private interface WeightProvider {
-        Number getWeight(int from, int to);
-    }
-
     private static boolean isHeadless() {
         return GraphGUI.isHeadless();
     }