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argument parsing for lefse_format_input #17

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robert102 opened this issue Mar 15, 2022 · 0 comments

robert102 commented Mar 15, 2022

line 393 ignores the parsed arguments and requires the first argument to be the input file:

lefse/lefse/lefse_format_input.py

Line 393 in 200aa6a

    
           CommonArea = read_input_file(sys.argv[1], CommonArea)       #Pass The CommonArea to the Read

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