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Please correct the “lefse_plot_cladogram.py” Line 270 in biobakery lefse online server #31

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jahernayeem opened this issue Jul 2, 2023 · 0 comments

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@jahernayeem
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The shaded area in the cladogram has been shifted to the right side. I have ran the same data in the legacy website of galaxy which visualized the cladogram correctly. But this new biobakery site of LEfSe is shifting the shaded area of taxa to the right side automatically.
Then I run LEfSe with the command line after correcting “lefse_plot_cladogram.py” line 270
ax.bar(fr_0, clto, width = fr_1-fr_0, bottom = float(l-1)/float(de), alpha = params[‘alpha’], color=col, edgecolor=col)
to
ax.bar(fr_0, clto, width = fr_1-fr_0, bottom = float(l-1)/float(de), align=‘edge’, alpha = params[‘alpha’], color=col, edgecolor=col)

The shaded area showed in the right place. I think this will be helpful for everyone if you could correct this “lefse_plot_cladogram.py” line 270 in the BIOBAKERY website.

Images are added for the references.
lefse_status_clad_pre
lefse_status_clad_with_corrected_command

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