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Example_of_cnv.segData.seg
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sample segChrom segL segR callType numCopies numCopies_ciLow numCopies_ciHigh alleleRatio alleleRatio_ciLow alleleRatio_ciHigh MEAN_LOG_COPY_RATIO
ISM732256-2 1 861072 17263618 loss 1.7903 1.7779 1.7983 1.0694 1.0558 1.0719 -0.1572
ISM732256-2 1 17264645 17275156 gain 2.2869 2.1945 2.3995 0.9725 0.9393 1.0013 0.1930
ISM732256-2 1 17275157 33476684 loss 1.7889 1.7783 1.8020 1.0965 1.0912 1.0974 -0.1625
ISM732256-2 1 33477469 50667100 gain 2.3319 2.3207 2.3438 1.1219 1.1090 1.1253 0.2220
ISM732256-2 1 50884087 59148206 gain 4.1509 4.1215 4.1990 1.5124 1.5030 1.5189 1.0528
ISM732256-2 1 59150575 64038437 gain 3.4626 3.4243 3.5033 1.4077 1.3872 1.4110 0.7969
ISM732256-2 1 64058910 108728826 normal 2.0647 2.0500 2.0783 1.0797 1.0646 1.0803 0.0505
ISM732256-2 1 108734868 108735493 loss 0.0087 0.0070 0.0111 nan nan nan -7.8452
ISM732256-2 1 108742328 120437336 normal 2.1187 2.0954 2.1346 1.0918 1.0888 1.0922 0.0832
ISM732256-2 1 120437337 145096871 gain 2.6235 2.5780 2.6864 0.9982 0.9905 1.0105 0.3955
ISM732256-2 1 145103658 145367249 normal 2.0383 1.9328 2.1626 1.4769 1.4572 1.4875 0.1032
ISM732256-2 1 145367464 152760382 normal 2.0548 2.0398 2.0704 1.1302 1.1135 1.1366 0.0372
ISM732256-2 1 152770021 152770865 loss 0.0405 0.0352 0.0468 nan nan nan -5.6522
ISM732256-2 1 152777348 196801379 normal 2.0683 2.0613 2.0793 1.1119 1.1048 1.1131 0.0516
ISM732256-2 1 196857031 213062849 normal 1.8636 1.8481 1.8723 1.0161 1.0034 1.0559 -0.1031
ISM732256-2 1 213068078 249212550 normal 2.0116 2.0008 2.0241 1.1092 1.1034 1.1157 0.0081
ISM732256-2 2 41358 113083024 normal 2.0903 2.0787 2.1048 1.1549 1.1475 1.1559 0.0641
ISM732256-2 2 113088332 183605365 normal 1.8694 1.8558 1.8779 1.1940 1.1927 1.1946 -0.0974
ISM732256-2 2 183605720 217364371 normal 2.0835 2.0684 2.0971 1.0539 1.0239 1.0669 0.0603
ISM732256-2 2 217364422 242815615 normal 1.8927 1.8805 1.9038 1.1703 1.1699 1.1706 -0.0790
ISM732256-2 3 361210 89445361 loss 1.7802 1.7709 1.7897 1.1053 1.1038 1.1138 -0.1675
ISM732256-2 3 89448218 116164128 gain 2.3102 2.2979 2.3225 1.2719 1.2659 1.2744 0.2108
ISM732256-2 3 118621117 121641385 normal 1.9309 1.9060 1.9506 1.1430 1.1362 1.1484 -0.0517
ISM732256-2 3 121641386 197765788 gain 2.2703 2.2507 2.2896 1.3163 1.3005 1.3174 0.1823
ISM732256-2 4 53133 66535710 normal 2.1654 2.1484 2.1822 0.9945 0.9935 0.9989 0.1173
ISM732256-2 4 68338073 130033196 normal 1.8312 1.8223 1.8434 1.1553 1.1461 1.1553 -0.1273
ISM732256-2 4 134071046 166184761 normal 2.0866 2.0643 2.0978 0.9994 0.9971 1.0076 0.0605
ISM732256-2 4 166215261 190884534 loss 1.5921 1.5706 1.6086 1.2922 1.2860 1.2945 -0.3289
ISM732256-2 5 140173 49695997 gain 2.4114 2.3910 2.4295 0.9907 0.9783 0.9994 0.2704
ISM732256-2 5 49697870 180687751 loss 1.7917 1.7775 1.8007 1.0972 1.0802 1.0988 -0.1582
ISM732256-2 6 292290 31325185 gain 2.3211 2.3078 2.3328 1.1334 1.1113 1.1451 0.2158
ISM732256-2 6 31371160 32411937 normal 2.2106 2.1867 2.2248 1.1352 1.1218 1.1398 0.1409
ISM732256-2 6 32486897 57372605 gain 2.3801 2.3691 2.3924 1.1107 1.1008 1.1180 0.2525
ISM732256-2 6 57392862 74533607 normal 2.0398 2.0145 2.0665 1.1947 1.1941 1.1966 0.0291
ISM732256-2 6 75796013 170893919 loss 1.7116 1.7058 1.7203 0.9830 0.9747 0.9976 -0.2217
ISM732256-2 7 192950 2998390 gain 3.9226 3.8872 3.9727 1.2962 1.2951 1.3044 0.9790
ISM732256-2 7 3658462 17380102 gain 2.9451 2.9168 2.9616 1.1502 1.1398 1.1515 0.5589
ISM732256-2 7 17382295 47969373 normal 2.1629 2.1441 2.1875 1.0982 1.0922 1.0985 0.1138
ISM732256-2 7 47970451 54825531 gain 2.7158 2.6784 2.7559 1.1858 1.1812 1.2114 0.4172
ISM732256-2 7 55209729 55640267 gain 15.3857 14.9638 15.8159 1.4745 0.9908 1.7663 2.9568
ISM732256-2 7 55863356 56184257 gain 8.9508 8.6971 9.1533 1.7814 1.7812 1.8140 2.1623
ISM732256-2 7 57187297 92099828 gain 2.3178 2.2935 2.3327 1.1010 1.0977 1.1063 0.2165
ISM732256-2 7 92116521 103848602 gain 2.6484 2.6369 2.6639 1.0090 0.9855 1.0158 0.4035
ISM732256-2 7 104681150 115851038 gain 3.5261 3.5050 3.5685 1.1323 1.1272 1.1518 0.8187
ISM732256-2 7 115874338 117026113 gain 4.8786 4.7756 5.0201 1.1330 0.9904 1.2490 1.2866
ISM732256-2 7 117059967 121023273 gain 2.3840 2.3396 2.4178 0.9801 0.9626 0.9945 0.2638
ISM732256-2 7 121513304 121769841 gain 4.2988 4.2157 4.3773 nan nan nan 1.1044
ISM732256-2 7 121773321 142457625 gain 2.2669 2.2534 2.2878 1.0940 1.0933 1.1104 0.1790
ISM732256-2 7 142458156 142461121 gain 2.3177 2.0471 2.5679 1.5279 1.5134 1.5301 0.2086
ISM732256-2 7 142560736 148497924 normal 2.1753 2.1349 2.2112 1.0567 1.0539 1.0798 0.1089
ISM732256-2 7 148504488 158937713 gain 2.6436 2.6165 2.6724 0.9779 0.9616 0.9785 0.4016
ISM732256-2 8 190646 43049236 loss 1.5931 1.5787 1.6005 1.2965 1.2915 1.3014 -0.3291
ISM732256-2 8 43051841 101722209 gain 2.2923 2.2764 2.3080 1.2278 1.2197 1.2299 0.1979
ISM732256-2 8 101724340 146279793 gain 2.5831 2.5669 2.6017 1.3149 1.3052 1.3151 0.3693
ISM732256-2 9 116550 19450884 normal 2.0836 2.0678 2.0989 1.4251 1.4214 1.4349 0.0662
ISM732256-2 9 19515901 23762482 loss 1.1776 1.1564 1.2006 1.0084 1.0010 1.0391 -0.7473
ISM732256-2 9 24542977 69257139 normal 2.0059 1.9862 2.0302 1.4669 1.4571 1.4689 0.0124
ISM732256-2 9 69420013 84548080 loss 1.5238 1.5137 1.5389 1.0627 1.0164 1.1015 -0.3924
ISM732256-2 9 84562305 96238870 loss 1.7622 1.7434 1.7784 1.0128 1.0022 1.0294 -0.1727
ISM732256-2 9 96259503 99800575 gain 2.2364 2.2061 2.2622 1.1950 1.1604 1.2347 0.1603
ISM732256-2 9 100069788 107299344 loss 1.6866 1.6689 1.7080 1.0087 1.0017 1.0267 -0.2366
ISM732256-2 9 107331199 120477176 normal 2.0694 2.0601 2.0828 1.1405 1.1378 1.1450 0.0547
ISM732256-2 9 121929112 132989016 loss 1.5208 1.5071 1.5338 1.0781 1.0413 1.0905 -0.3991
ISM732256-2 9 133327366 141016670 gain 2.4803 2.4497 2.5016 1.2996 1.2908 1.3033 0.3119
ISM732256-2 10 92747 43604928 loss 1.6356 1.6244 1.6527 1.1225 1.1176 1.1298 -0.2894
ISM732256-2 10 43606405 76430277 normal 1.9126 1.9018 1.9207 1.0933 1.0509 1.0958 -0.0615
ISM732256-2 10 76602366 84745611 gain 2.7126 2.6716 2.7525 1.1367 1.0886 1.1565 0.4338
ISM732256-2 10 85901007 96954684 loss 1.7563 1.7412 1.7700 1.1715 1.1584 1.1731 -0.1877
ISM732256-2 10 96961492 135439267 normal 1.9671 1.9546 1.9749 1.0916 1.0887 1.0923 -0.0262
ISM732256-2 11 192850 32126268 loss 1.7401 1.7324 1.7517 1.3165 1.3044 1.3174 -0.2027
ISM732256-2 11 32410354 50004287 normal 1.9025 1.8863 1.9198 1.0736 1.0555 1.0807 -0.0676
ISM732256-2 11 51411198 76063657 gain 2.5355 2.5160 2.5520 1.2463 1.2346 1.2486 0.3440
ISM732256-2 11 76063658 82564570 gain 3.7136 3.6612 3.7602 0.9762 0.9737 0.9794 0.8909
ISM732256-2 11 82570769 86267994 gain 3.0146 2.9842 3.0659 1.1835 1.1555 1.1977 0.5892
ISM732256-2 11 86270482 103908991 gain 2.4422 2.4201 2.4602 1.2242 1.1946 1.2385 0.2812
ISM732256-2 11 104034282 108383013 gain 2.8248 2.7967 2.8531 1.0360 0.9844 1.0916 0.4990
ISM732256-2 11 108383014 116969381 gain 2.2248 2.1955 2.2490 1.3969 1.3950 1.3971 0.1563
ISM732256-2 11 117022914 123811530 gain 2.7054 2.6900 2.7233 1.1228 1.1093 1.1259 0.4391
ISM732256-2 11 123813324 129740138 gain 2.3250 2.3036 2.3453 1.2397 1.2301 1.2434 0.2206
ISM732256-2 11 129742529 134257803 gain 2.7262 2.6937 2.7553 1.0965 1.0882 1.0972 0.4477
ISM732256-2 12 175799 28458989 normal 2.1924 2.1847 2.2029 1.4435 1.4308 1.4514 0.1310
ISM732256-2 12 28459425 48547529 loss 1.7599 1.7478 1.7721 1.2046 1.1925 1.2093 -0.1855
ISM732256-2 12 48577656 50749861 normal 1.9448 1.9292 1.9589 1.4154 1.4100 1.4210 -0.0406
ISM732256-2 12 50749862 56113643 normal 2.0083 1.9974 2.0239 1.4266 1.4186 1.4306 0.0039
ISM732256-2 12 56114719 62893078 gain 2.5244 2.4996 2.5480 1.1060 1.0840 1.1077 0.3370
ISM732256-2 12 62894313 104713613 normal 1.9746 1.9516 1.9843 1.4144 1.4078 1.4166 -0.0186
ISM732256-2 12 104714619 105759870 gain 2.9750 2.9159 3.0304 1.0000 0.9958 1.0279 0.5719
ISM732256-2 12 105760145 113665019 normal 1.9500 1.9296 1.9574 1.3987 1.3972 1.4026 -0.0348
ISM732256-2 12 113697923 113909553 gain 2.8031 2.7303 2.8701 0.9997 0.9953 1.0066 0.4863
ISM732256-2 12 114260779 133811192 normal 1.9222 1.9144 1.9359 1.4266 1.4169 1.4296 -0.0555
ISM732256-2 13 19747753 21306510 normal 2.1644 2.1055 2.1942 nan nan nan 0.0922
ISM732256-2 13 21311612 45857946 loss 1.5543 1.5466 1.5707 1.2369 1.2130 1.2376 -0.3589
ISM732256-2 13 45911271 53624853 normal 2.1449 2.1291 2.1588 1.0785 1.0607 1.0979 0.1038
ISM732256-2 13 58206431 115092006 loss 1.6528 1.6433 1.6679 1.3164 1.3073 1.3209 -0.2758
ISM732256-2 14 19377344 27065009 normal 2.0714 2.0560 2.0825 1.2682 1.2681 1.2777 0.0504
ISM732256-2 14 27066257 45565681 gain 2.6822 2.6554 2.7081 1.4429 1.4124 1.4484 0.4247
ISM732256-2 14 45565840 105071328 loss 1.7326 1.7272 1.7379 1.1090 1.1080 1.1141 -0.2054
ISM732256-2 14 105167453 105417149 normal 2.2100 2.1608 2.2605 1.3329 1.3035 1.3476 0.1492
ISM732256-2 14 105417150 105418149 loss 0.1158 0.0933 0.1339 1.0214 1.0033 1.0748 -4.1193
ISM732256-2 14 105418150 105996381 loss 1.7821 1.7506 1.8114 1.0741 1.0100 1.1298 -0.1657
ISM732256-2 15 20739247 102359139 loss 1.7134 1.7048 1.7222 1.3464 1.3349 1.3506 -0.2229
ISM732256-2 16 101308 5147990 loss 1.7617 1.7510 1.7737 1.1264 1.1257 1.1309 -0.1820
ISM732256-2 16 6069650 20635787 gain 2.2443 2.2287 2.2710 1.0787 1.0746 1.0887 0.1739
ISM732256-2 16 20636495 62055557 normal 1.9698 1.9497 1.9849 1.0848 1.0716 1.0891 -0.0193
ISM732256-2 16 64981256 84879760 gain 2.3311 2.3162 2.3507 0.9893 0.9875 0.9970 0.2236
ISM732256-2 16 84882741 90142568 loss 1.7135 1.6991 1.7274 1.3639 1.3601 1.3647 -0.2190
ISM732256-2 17 5757 21188531 loss 1.6748 1.6642 1.6801 1.3405 1.3326 1.3411 -0.2556
ISM732256-2 17 21201475 21320206 gain 2.4497 2.3066 2.5880 1.4101 1.4095 1.4119 0.2990
ISM732256-2 17 21438311 38600586 gain 2.2369 2.2152 2.2554 0.9995 0.9976 1.0045 0.1609
ISM732256-2 17 38608987 57684783 normal 2.0984 2.0889 2.1105 1.0539 1.0431 1.0558 0.0720
ISM732256-2 17 57697243 81052570 gain 2.2987 2.2883 2.3106 1.1470 1.1466 1.1471 0.2021
ISM732256-2 18 158449 78005481 normal 1.9628 1.9501 1.9739 1.4085 1.4015 1.4138 -0.0268
ISM732256-2 19 281138 1005802 loss 1.6251 1.6095 1.6450 1.3631 1.3411 1.3900 -0.2992
ISM732256-2 19 1007377 12769200 loss 1.5926 1.5803 1.6023 1.3100 1.3054 1.3103 -0.3254
ISM732256-2 19 12773881 13226696 normal 2.0053 1.9839 2.0297 1.0466 1.0192 1.3333 0.0076
ISM732256-2 19 13226697 14081237 loss 1.5552 1.5309 1.5761 1.2240 1.1605 1.2502 -0.3726
ISM732256-2 19 14083305 17396878 normal 2.0391 2.0269 2.0591 1.4514 1.4503 1.4532 0.0284
ISM732256-2 19 17396939 18368739 normal 2.1336 2.1144 2.1550 1.4810 1.4721 1.4864 0.1011
ISM732256-2 19 18368740 21719831 normal 2.0503 2.0346 2.0732 1.4783 1.4644 1.4795 0.0404
ISM732256-2 19 21719832 23941801 loss 1.1615 1.1348 1.1911 1.1858 1.1324 1.2163 -0.7752
ISM732256-2 19 24097547 37488751 normal 2.0341 2.0206 2.0546 1.4604 1.4517 1.4655 0.0265
ISM732256-2 19 37579771 43262682 normal 2.0882 2.0723 2.1025 1.4648 1.4560 1.4715 0.0625
ISM732256-2 19 43267818 44086403 loss 1.5230 1.4945 1.5543 1.2736 1.2319 1.3084 -0.4391
ISM732256-2 19 44095928 46825473 gain 2.6009 2.5721 2.6349 1.5443 1.5365 1.5518 0.3817
ISM732256-2 19 46828542 47354273 gain 3.3336 3.2619 3.4080 1.0292 1.0018 1.5813 0.7390
ISM732256-2 19 47421683 52448121 loss 1.4530 1.4458 1.4626 1.2535 1.2452 1.2554 -0.4595
ISM732256-2 19 52448122 53086204 normal 1.8194 1.7733 1.8531 1.3639 1.3426 1.3697 -0.1186
ISM732256-2 19 53086205 53118016 loss 1.6294 1.4509 1.7856 1.0146 1.0015 1.0577 -0.3113
ISM732256-2 19 53207940 59083006 normal 2.0503 2.0287 2.0661 1.4376 1.4336 1.4443 0.0322
ISM732256-2 20 76396 30064838 gain 2.8466 2.8305 2.8747 1.0508 1.0239 1.0550 0.5098
ISM732256-2 20 30065381 41420356 gain 2.3716 2.3518 2.3905 1.1232 1.0945 1.1292 0.2449
ISM732256-2 20 42086424 62905203 normal 2.1081 2.0852 2.1203 1.0077 1.0023 1.0090 0.0750
ISM732256-2 21 10906655 10973983 normal 2.1106 2.0367 2.2158 1.0497 1.0038 1.2451 0.1054
ISM732256-2 21 14982300 15481651 loss 0.0359 0.0306 0.0474 nan nan nan -2.8889
ISM732256-2 21 15516694 48084536 normal 1.8036 1.7894 1.8112 0.9868 0.9575 0.9968 -0.1495
ISM732256-2 22 16287004 17072516 loss 1.9499 1.6370 2.3017 nan nan nan -2.9488
ISM732256-2 22 17072517 33253597 gain 2.3607 2.3427 2.3748 1.1652 1.1585 1.1666 0.2452
ISM732256-2 22 33253754 49103906 normal 1.9706 1.9568 1.9818 1.0009 0.9969 1.0152 -0.0247
ISM732256-2 22 49145401 51216659 gain 2.5089 2.4684 2.5353 1.1691 1.1638 1.1716 0.3245
ISM732256-2 X 200605 41334402 normal 1.8808 1.8713 1.8899 1.1398 1.1213 1.1493 -0.0899
ISM732256-2 X 41379423 57937104 normal 2.1576 2.1370 2.1738 1.0116 1.0012 1.0209 0.1071
ISM732256-2 X 62569699 155240230 loss 1.7128 1.7015 1.7209 1.3792 1.3576 1.3930 -0.2247
ISM732256-2 Y 21154103 21154845 loss 0.5810 0.4704 0.7336 0.9770 0.9072 0.9989 -0.7289
ISM732279-2 1 861072 17263618 normal 2.0220 2.0082 2.0419 NA NA NA 0.0185
ISM732279-2 1 17264645 17275156 gain 2.3638 2.2039 2.5205 NA NA NA 0.2424
ISM732279-2 1 17275157 104094652 normal 1.9872 1.9791 1.9980 NA NA NA -0.0089
ISM732279-2 1 104113975 104162656 gain 4.2987 4.1065 4.5218 NA NA NA 1.1071
ISM732279-2 1 104296871 108728826 normal 2.0086 1.9638 2.0557 NA NA NA -0.0023
ISM732279-2 1 108734868 108735493 loss 0.0129 0.0108 0.0157 NA NA NA -7.2613
ISM732279-2 1 108742328 120612270 normal 2.0128 2.0035 2.0265 NA NA NA 0.0114
ISM732279-2 1 120929772 145367249 gain 2.2366 2.2062 2.2784 NA NA NA 0.1519
ISM732279-2 1 145367464 152760382 normal 2.0058 1.9935 2.0145 NA NA NA 0.0072
ISM732279-2 1 152770021 152770865 loss 0.0555 0.0492 0.0666 NA NA NA -5.1528
ISM732279-2 1 152777348 249212550 normal 1.9962 1.9913 2.0028 NA NA NA 0.0008
ISM732279-2 2 41358 242815615 normal 1.9874 1.9810 1.9936 NA NA NA -0.0061
ISM732279-2 3 361210 197765788 normal 1.9958 1.9888 2.0059 NA NA NA -0.0004
ISM732279-2 4 53133 190884534 normal 1.9816 1.9737 1.9892 NA NA NA -0.0095
ISM732279-2 5 140173 180687751 normal 1.9868 1.9770 1.9990 NA NA NA -0.0069
ISM732279-2 6 292290 170893919 normal 2.0042 1.9977 2.0148 NA NA NA 0.0045
ISM732279-2 7 192950 158937713 normal 1.9980 1.9882 2.0046 NA NA NA 0.0037
ISM732279-2 8 190646 146279793 normal 1.9895 1.9781 2.0047 NA NA NA -0.0048
ISM732279-2 9 116550 141016670 normal 1.9959 1.9877 2.0021 NA NA NA 0.0034
ISM732279-2 10 92747 135439267 normal 1.9844 1.9797 1.9893 NA NA NA -0.0070
ISM732279-2 11 192850 134257803 normal 2.0007 1.9955 2.0114 NA NA NA 0.0037
ISM732279-2 12 175799 133811192 normal 1.9912 1.9865 1.9981 NA NA NA -0.0052
ISM732279-2 13 19747753 115092006 normal 1.9866 1.9782 1.9942 NA NA NA -0.0070
ISM732279-2 14 19377344 105996381 normal 1.9933 1.9801 2.0041 NA NA NA -0.0029
ISM732279-2 15 20739247 102359139 normal 1.9816 1.9718 1.9954 NA NA NA -0.0120
ISM732279-2 16 101308 90142568 normal 1.9987 1.9910 2.0024 NA NA NA 0.0048
ISM732279-2 17 5757 81052570 normal 1.9972 1.9879 2.0050 NA NA NA 0.0032
ISM732279-2 18 158449 78005481 normal 1.9937 1.9844 2.0013 NA NA NA -0.0022
ISM732279-2 19 281138 59083006 normal 2.0175 2.0066 2.0241 NA NA NA 0.0153
ISM732279-2 20 76396 62905203 normal 1.9899 1.9808 1.9990 NA NA NA -0.0035
ISM732279-2 21 10906655 48084536 normal 1.9699 1.9603 1.9801 NA NA NA -0.0220
ISM732279-2 22 16287004 51216659 normal 1.9839 1.9748 1.9908 NA NA NA -0.0087
ISM732279-2 X 200605 155240230 normal 2.0219 2.0152 2.0358 NA NA NA 0.0164
ISM732279-2 Y 21154103 21154845 loss 0.8820 0.7627 0.9934 NA NA NA -0.1933