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This repository was archived by the owner on Mar 31, 2023. It is now read-only.

Sema4-Research / pgr-tk-notebooks Public archive

forked from GeneDx/pgr-tk-notebooks

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pgr-tk-notebooks

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get_agc_binary.sh

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pgr-tk-notebooks

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get_agc_binary.sh

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7 lines (4 loc) · 299 Bytes

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# download precompiled AGC binary for Linux

curl -L https://github.com/refresh-bio/agc/releases/download/v1.1/agc-1.1_x64-linux.tar.gz|tar -zxvf - agc-1.1_x64-linux/agc

# example of generate agc

./agc-1.1_x64-linux/agc create /data/GCA_000001405.15_GRCh38_no_alt_analysis_set.fna.gz > grch38.agc

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