From 5281dc4dc3caa44350482d657426f8d00ea01436 Mon Sep 17 00:00:00 2001 From: DonFreed Date: Mon, 30 Sep 2024 13:31:45 -0700 Subject: [PATCH] Update github actions --- .github/workflows/main.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml index 60278c7..5c32088 100644 --- a/.github/workflows/main.yml +++ b/.github/workflows/main.yml @@ -116,7 +116,7 @@ jobs: "output hifi.vcf.gz" sentieon driver -r "tests/smoke/r ef.fa" -t 1 --algo GVCFtyper \ -v "output hifi.g.vcf.gz" output_hifi_gvcftyper.vcf.gz - if [ ! -f "output hifi.sv.vcf.gz" -o ! -f "output hifi.haploid.vcf.gz" ]; then + if [ ! -f "output hifi.sv.vcf.gz" ]; then exit 1 fi - name: Smoke test - gVCF @@ -153,4 +153,4 @@ jobs: if [ ! -f "output fq.vcf.gz" -o ! -f "output fq_mm2_sorted_fq_0.cram" -o ! -f "output fq.sv.vcf.gz" ]; then exit 1 fi - \ No newline at end of file +