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Sentieon-Docker

Example Dockerfiles for use with the Sentieon software

Requirements

Sentieon's Dockerfiles use multi-stage builds and therfore require Docker 17.05 or later.

Example Usage

Build a container image for a specific version of the Sentieon tools:

git clone https://github.com/Sentieon/sentieon-docker.git
cd sentieon-docker
docker build --build-arg SENTIEON_VERSION=202308.03 .
# ...
# Successfully built a1575042a0a6

Run the created container interactively:

$ docker run --rm -it a1575042a0a6 /bin/bash
root@fbcaddc2fb3c:/# sentieon
Thank you for using Sentieon software. Supported commands are:
  STAR bamslice bwa driver fqidx gnuplot licclnt licsrvr minimap2 plot pyexec rcat umi util

More information

For additional help with Docker, please see the Docker documentation. For additional help with the Sentieon tools, please visit the Sentieon support page.