run_bayescenv_chtc.sub

# submit a job node for running BayeScEnv

### this is a single job that stages large data
# Files for the below lines MUST all be somewhere within /home/username,
# and not within /staging/username

initialdir = $(outdir_home)
executable = $(dir_scripts)/run_bayescenv_chtc.sh
arguments = "$(chr) $(env_var) $(num) $(in_snp) $(in_env) $(pr_pref)"
log = $(job).log
output = $(job).out
error = $(job).err
when_to_transfer_output = ON_EXIT_OR_EVICT

## Do NOT list the large data files here
transfer_input_files = $(software_pack), $(in_snp), $(in_env)
should_transfer_files = YES

# IMPORTANT! Require execute servers that can access /staging
# Requirements = (Target.HasCHTCStaging == true)

# add this flag for jobs expected to run for longer than 72 hours
# do not use the +LongJob flag unnecessarily or without consulting the Research Computing Facilitators. 
# When this flag is applied in other cases, it can make a job take longer to start 
+LongJob = $(longjob)

# Make sure to still include lines like "request_memory", "request_disk", "request_cpus", etc. 
+WantFlocking = false
+WantGlideIn = false
request_cpus = $(request_cpus)
request_memory = $(request_memory)
request_disk = $(request_disk)

# periodic_release = (JobStatus == 5) && (NumJobStarts < 5) && (HoldReasonCode == 21)
# request_memory = ifthenelse(MemoryUsage > RequestMemory, MAX({$(request_memory),MemoryUsage * 4/3}), $(request_memory))
# request_disk = ifthenelse(DiskUsage > RequestDisk, MAX({$(request_disk),DiskUsage * 4/3}), $(request_disk))
queue