This program identify genes associated with environment-associated adaptive loci from GEA.
- This program pare down closely linked candidate SNPs (from GEA) by maintaining the site with the lowest q within each 20 kb genomic window, and identify the closest gene in each direction within a 200-exon flanking region that overlapped with each candidate SNP.
- First generate perl script for each environmental variable from a template perl script GO_SNP_parallel_genomic_permutation_modifiedsuz.pl by running modify_pl_linkedGene.py
- Then run submit_jobs.sh to identify associated genes
- Generate tables of full information about significantly associated loci (including association statistics) and genes.