From 19b911157670f0e0c9618706d4b8d27ef8fbeeeb Mon Sep 17 00:00:00 2001 From: Mingfu Shao Date: Thu, 16 Sep 2021 07:50:58 +0000 Subject: [PATCH] update version; prepare to release 1.1.2 --- README.md | 2 +- configure.ac | 1 + configure.bioconda.ac | 2 +- configure.linux.ac | 2 +- configure.mac.ac | 2 +- src/config.cc | 2 +- 6 files changed, 6 insertions(+), 5 deletions(-) create mode 120000 configure.ac diff --git a/README.md b/README.md index 4e731bb..95ab80c 100644 --- a/README.md +++ b/README.md @@ -9,7 +9,7 @@ The development of Scallop2 has been based on the [Scallop](https://github.com/K Scallop2 can be easily installed with conda: [![Anaconda-Server Badge](https://anaconda.org/bioconda/scallop2/badges/installer/conda.svg)](https://anaconda.org/bioconda/scallop2) Install from source code: download the source code of Scallop2 from -[here](https://github.com/Shao-Group/scallop2/releases/download/v1.1.1/scallop2-1.1.1.tar.gz). +[here](https://github.com/Shao-Group/scallop2/releases/download/v1.1.2/scallop2-1.1.2.tar.gz). Scallop2 uses additional libraries of Boost and htslib. If they have not been installed in your system, you first need to download and install them. You might also need to diff --git a/configure.ac b/configure.ac new file mode 120000 index 0000000..34a88da --- /dev/null +++ b/configure.ac @@ -0,0 +1 @@ +configure.linux.ac \ No newline at end of file diff --git a/configure.bioconda.ac b/configure.bioconda.ac index 625f200..0c5405e 100644 --- a/configure.bioconda.ac +++ b/configure.bioconda.ac @@ -2,7 +2,7 @@ # Process this file with autoconf to produce a configure script. AC_PREREQ([2.63]) -AC_INIT(scallop2, 1.1.1, shaomingfu@gmail.com) +AC_INIT(scallop2, 1.1.2, shaomingfu@gmail.com) AM_INIT_AUTOMAKE() AC_CONFIG_SRCDIR([src/main.cc]) AC_CONFIG_HEADERS([config.h]) diff --git a/configure.linux.ac b/configure.linux.ac index a5bc341..9075ac0 100644 --- a/configure.linux.ac +++ b/configure.linux.ac @@ -2,7 +2,7 @@ # Process this file with autoconf to produce a configure script. AC_PREREQ([2.63]) -AC_INIT(scallop2, 1.1.1, shaomingfu@gmail.com) +AC_INIT(scallop2, 1.1.2, shaomingfu@gmail.com) AM_INIT_AUTOMAKE() AC_CONFIG_SRCDIR([src/main.cc]) AC_CONFIG_HEADERS([config.h]) diff --git a/configure.mac.ac b/configure.mac.ac index bdbe5d9..572d8c4 100644 --- a/configure.mac.ac +++ b/configure.mac.ac @@ -2,7 +2,7 @@ # Process this file with autoconf to produce a configure script. AC_PREREQ([2.69]) -AC_INIT(scallop2, 1.1.1, shaomingfu@gmail.com) +AC_INIT(scallop2, 1.1.2, shaomingfu@gmail.com) AM_INIT_AUTOMAKE() AC_CONFIG_SRCDIR([src/main.cc]) AC_CONFIG_HEADERS([config.h]) diff --git a/src/config.cc b/src/config.cc index 433f176..aa84a1c 100644 --- a/src/config.cc +++ b/src/config.cc @@ -103,7 +103,7 @@ string fixed_gene_name = ""; int batch_bundle_size = 100; int verbose = 1; int assemble_duplicates = 10; -string version = "v1.1.1"; +string version = "v1.1.2"; int parse_arguments(int argc, const char ** argv) {