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Not real transcripts fusioin #3

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Huangyizhong opened this issue Dec 28, 2021 · 0 comments
Open

Not real transcripts fusioin #3

Huangyizhong opened this issue Dec 28, 2021 · 0 comments

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@Huangyizhong
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Hi, there
The scallop2 is a good software to do the assembly of the RNA-seq data. These day, I also check the results form the scallop with the IGV. There are some transcripts that merge from two seperate transcripts, and the other part was labeled as UTR region. As shown in the following picture, the transcripts from gene TGS101 and UEVLD covered each other. I wonder the reality of these transcripts and how to deal with? Any ideas?
Thank so much!
yizhong Huang

image

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