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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(caliblist_advise_lipidomics)
export(calibplot_advise_lipidomics)
export(diffexp_advise_lipidomics)
export(enrichment_advise_lipidomics)
export(expdesign_advise_lipidomics)
export(filter_advise_lipidomics)
export(na_advise_lipidomics)
export(read_advise_lipidomics)
export(recovery_advise_lipidomics)
export(run_ADViSELipidomics)
export(sumexp_advise_lipidomics)
export(theme_ADViSE)
export(workbench_advise_lipidomics)
import(DataEditR)
import(dashboardthemes)
import(dplyr)
import(ggVennDiagram)
import(ggfortify)
import(ggplot2, except = last_plot)
import(limma)
import(plotly, except = rename)
import(scales)
import(shiny)
import(shinyBS)
import(shinyWidgets)
import(shinydashboard)
import(statmod)
import(utils)
importFrom(ComplexHeatmap,Heatmap)
importFrom(ComplexHeatmap,HeatmapAnnotation)
importFrom(ComplexHeatmap,UpSet)
importFrom(ComplexHeatmap,anno_barplot)
importFrom(ComplexHeatmap,column_order)
importFrom(ComplexHeatmap,comb_degree)
importFrom(ComplexHeatmap,comb_size)
importFrom(ComplexHeatmap,decorate_annotation)
importFrom(ComplexHeatmap,draw)
importFrom(ComplexHeatmap,ht_opt)
importFrom(ComplexHeatmap,make_comb_mat)
importFrom(ComplexHeatmap,upset_right_annotation)
importFrom(DT,DTOutput)
importFrom(DT,JS)
importFrom(DT,datatable)
importFrom(DT,renderDT)
importFrom(DataEditR,dataEditServer)
importFrom(DataEditR,dataEditUI)
importFrom(DataEditR,dataOutputServer)
importFrom(DataEditR,dataOutputUI)
importFrom(MASS,rlm)
importFrom(RColorBrewer,brewer.pal)
importFrom(S4Vectors,metadata)
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,rowData)
importFrom(VIM,aggr)
importFrom(VIM,irmi)
importFrom(VIM,kNN)
importFrom(bsplus,bs_embed_tooltip)
importFrom(bsplus,use_bs_tooltip)
importFrom(cicerone,Cicerone)
importFrom(cicerone,use_cicerone)
importFrom(circlize,colorRamp2)
importFrom(cluster,clara)
importFrom(cluster,pam)
importFrom(crayon,bgYellow)
importFrom(crayon,red)
importFrom(dashboardthemes,shinyDashboardThemeDIY)
importFrom(data.table,rbindlist)
importFrom(dendextend,color_branches)
importFrom(dplyr,across)
importFrom(dplyr,arrange)
importFrom(dplyr,filter)
importFrom(dplyr,left_join)
importFrom(dplyr,select)
importFrom(factoextra,eclust)
importFrom(factoextra,fviz_cluster)
importFrom(factoextra,fviz_dend)
importFrom(factoextra,fviz_nbclust)
importFrom(factoextra,fviz_silhouette)
importFrom(fgsea,fgsea)
importFrom(fmsb,radarchart)
importFrom(forcats,fct_rev)
importFrom(fs,path_home)
importFrom(ggpubr,annotate_figure)
importFrom(ggpubr,ggarrange)
importFrom(ggpubr,rremove)
importFrom(ggpubr,text_grob)
importFrom(ggrepel,geom_label_repel)
importFrom(golem,activate_js)
importFrom(golem,add_resource_path)
importFrom(golem,bundle_resources)
importFrom(golem,favicon)
importFrom(golem,with_golem_options)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,rainbow)
importFrom(graphics,par)
importFrom(grid,gpar)
importFrom(grid,grid.text)
importFrom(grid,unit)
importFrom(gridExtra,grid.arrange)
importFrom(knitr,kable)
importFrom(limma,is.fullrank)
importFrom(limma,makeContrasts)
importFrom(lubridate,as_date)
importFrom(metabolomicsWorkbenchR,do_query)
importFrom(miniUI,gadgetTitleBar)
importFrom(miniUI,miniTitleBarButton)
importFrom(miniUI,miniTitleBarCancelButton)
importFrom(mixOmics,background.predict)
importFrom(mixOmics,color.jet)
importFrom(mixOmics,color.mixo)
importFrom(mixOmics,perf)
importFrom(mixOmics,plotIndiv)
importFrom(mixOmics,plotVar)
importFrom(mixOmics,plsda)
importFrom(mixOmics,splsda)
importFrom(mixOmics,tune.splsda)
importFrom(openxlsx,read.xlsx)
importFrom(openxlsx,write.xlsx)
importFrom(purrr,flatten)
importFrom(purrr,map)
importFrom(purrr,pluck)
importFrom(purrr,set_names)
importFrom(readr,parse_number)
importFrom(readr,read_csv)
importFrom(readr,read_delim)
importFrom(readr,write_excel_csv)
importFrom(reshape2,dcast)
importFrom(reshape2,melt)
importFrom(shiny,NS)
importFrom(shiny,shinyApp)
importFrom(shiny,tagList)
importFrom(shinyBS,bsModal)
importFrom(shinyFiles,getVolumes)
importFrom(shinyFiles,parseDirPath)
importFrom(shinyFiles,shinyDirButton)
importFrom(shinyFiles,shinyDirChoose)
importFrom(shinyWidgets,awesomeRadio)
importFrom(shinyWidgets,sendSweetAlert)
importFrom(shinyWidgets,show_alert)
importFrom(shinycssloaders,withSpinner)
importFrom(shinyjs,useShinyjs)
importFrom(stats,as.dendrogram)
importFrom(stats,coef)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(stats,kmeans)
importFrom(stats,lm)
importFrom(stats,prcomp)
importFrom(stats,setNames)
importFrom(stringr,str_count)
importFrom(stringr,str_extract)
importFrom(stringr,str_replace)
importFrom(stringr,str_replace_all)
importFrom(stringr,str_split_fixed)
importFrom(stringr,str_sub)
importFrom(sva,ComBat)
importFrom(sva,num.sv)
importFrom(sva,sva)
importFrom(tibble,as_tibble)
importFrom(tibble,column_to_rownames)
importFrom(tibble,rownames_to_column)
importFrom(tidyr,gather)
importFrom(tidyr,pivot_longer)
importFrom(tidyr,pivot_wider)
importFrom(tidyr,replace_na)
importFrom(tidyr,separate)
importFrom(tidyr,unite)
importFrom(tools,file_ext)
importFrom(tools,file_path_sans_ext)
importFrom(utils,compareVersion)
importFrom(utils,head)
importFrom(utils,write.table)