Merge branch 'development'

.github/workflows/build.yml

@@ -17,7 +17,13 @@ on:
 
 jobs:
   build:
-    if: "!(contains(github.event.head_commit.message, '[ci skip]') || contains(github.event.head_commit.message, '[skip ci]'))"
+    if: |
+      !(
+        contains(github.event.head_commit.message, '[ci skip]') ||
+        contains(github.event.head_commit.message, '[ci-skip]') ||
+        contains(github.event.head_commit.message, '[skip ci]') ||
+        contains(github.event.head_commit.message, '[skip-ci]')
+      )
     env:
       PGHOST: 127.0.0.1
       PGUSER: postgres

.github/workflows/deliver.yml

@@ -15,7 +15,13 @@ on:
 
 jobs:
   deliver:
-    if: "!(contains(github.event.head_commit.message, '[ci skip]') || contains(github.event.head_commit.message, '[skip ci]'))"
+    if: |
+      !(
+        contains(github.event.head_commit.message, '[ci skip]') ||
+        contains(github.event.head_commit.message, '[ci-skip]') ||
+        contains(github.event.head_commit.message, '[skip ci]') ||
+        contains(github.event.head_commit.message, '[skip-ci]')
+      )
     env:
       REF_SHA: ${{ github.event.pull_request.head.sha || github.sha }}
       CACHE_PATH: ".github/.docker-cache"

CHANGELOG.md

@@ -9,8 +9,91 @@ This project <em>does not yet</em> adheres to [Semantic Versioning](https://semv
 
 \-
 
+## [0.16.0] - 2021-01-25
+### Added
+- New collecting event task [#1530]
+- "Quick" collection objects options from new collecting event task
+- New WKT georeference inputs
+- Auto-georeference and date Collecting Events by depicting images with pertinent EXIF data
+- Route linting specs
+- Generate label (alpha), pastes values into print label input 
+- Collecting event navigation options (next/previous with/out <many things>
+- Nested_attributes for Labels
+- Collection object/and collecting event navigation options/bridges
+- `/collecting_events/preview?<filter_params>` a preview look for brief tables
+- Subclasses for labels:`Label::QrCode`, `Label::Code128`
+- Include `rqrcode`, `barby` for barcode rendering
+- Add `label` attribute to Label JSON response that renders QR code
+- Add accommodation for printing pages of barcode-based labels
+- Add `Georeference::Wkt` an anonymous WKT based georeference assertion
+- Add option to disable name-casing when Person is created from `/people/new` [#1967] 
+- Full CASTOR (taxon names batch load) example template, CASTOR preview notices
+- New ICZN class added: NoDiagnosisAfter1930AndRejectedBefore2000 for family-group names
+- Add image attributions, original citation and editor options in image viewer [#1978]
+- Browse current OTU button in Browse OTU
+
+### Changed
+- Moved buttons in collecting event on comprehensive task [#1986]
+- Improved collecting event status in smart selector on comprehensive digitization
+- Some tasks route names were "malformed" and renamed
+- ENV variable`TAXONWORKS_TEST_LINTING=true` must now be `true`, not anything, to trigger linting specs
+- Setting `Identifier#cached` uses a build getter to enable Label building
+- Georeference validation requires CollectingEvent (enabled by proper use of `:inverse_of`)
+- Tweak to how `pinned?` is calculated trying to eliminate database calls
+- Minor cleanup of batch preview layouts
+- Changed softvalidation message for names being on Official ICZN lists
+- Fetch codecov, seedback and closure_tree gems from RubyGems.
+- Updated gems (`bundle update` without altering `Gemfile`).
+- Remove `no_leaves`= true from taxon name on filter images task [#1953]
+- Turn off autocomplete feature on vue autocomplete [#1956]
+- Limited CoLDP exports runtime to 1 hour and 2 attemps.
+- Turn off autocomplete on new taxon name task
+- Replaced display name attribute for object_label in parent autocomplete on New taxon name task
+- Filter task by name only [#1962]
+- Search geographic area by verbatim coordinates on new collecting event
+- Show coordinates from verbatim georeference
+- Parsed verbatim label to fields
+- Parsed EXIF coordinates to verbatim fields
+- Changed autocomplete label [#1988]
+- Using newer biodiversity gem from official source
+- Updated gems (`bundle update` without altering `Gemfile`)
+
+### Fixed
+- Loan items reference proper housekeeping in table
+- Line links of batch-preview results
+- broken API download link for exported references [#1908]
+- removed BASIS task stub [#1716]
+- `/api/v1/notes` project scoping [#1958]
+- `is_community?` reporting `false` for some models without `project_id`
+- New source after cloning not display changes on authors / editors lists
+- Edit taxon name firing multiple updates when updating gender [#1970]
+- Correct image size on image viewer
+- Save pages before clone person on new taxon name [#1977]
+- Correct count display of attributions [#1979]
+- Uncheck collecting event option [#1980]
+- Trip Code/Identifier not visible in header of Edit collecting event [#1990]
+
+[#1530]: https://github.com/SpeciesFileGroup/taxonworks/issues/1530
+[#1716]: https://github.com/SpeciesFileGroup/taxonworks/issues/1716
+[#1908]: https://github.com/SpeciesFileGroup/taxonworks/issues/1908
+[#1949]: https://github.com/SpeciesFileGroup/taxonworks/issues/1949
+[#1953]: https://github.com/SpeciesFileGroup/taxonworks/issues/1953
+[#1956]: https://github.com/SpeciesFileGroup/taxonworks/issues/1956
+[#1958]: https://github.com/SpeciesFileGroup/taxonworks/issues/1958
+[#1963]: https://github.com/SpeciesFileGroup/taxonworks/issues/1963
+[#1967]: https://github.com/SpeciesFileGroup/taxonworks/issues/1967
+[#1970]: https://github.com/SpeciesFileGroup/taxonworks/issues/1970
+[#1977]: https://github.com/SpeciesFileGroup/taxonworks/issues/1977
+[#1978]: https://github.com/SpeciesFileGroup/taxonworks/issues/1978
+[#1979]: https://github.com/SpeciesFileGroup/taxonworks/issues/1979
+[#1980]: https://github.com/SpeciesFileGroup/taxonworks/issues/1980
+[#1986]: https://github.com/SpeciesFileGroup/taxonworks/issues/1986
+[#1988]: https://github.com/SpeciesFileGroup/taxonworks/issues/1988
+[#1990]: https://github.com/SpeciesFileGroup/taxonworks/issues/1990
+
 ## [0.15.1] - 2020-12-14
 ### Added
+- `Person` can not be active for > 119 years
 - Show buffered values in `Task - Browse collection objects` [#1931]
 - Default pin button on Uniquify people task
 - Checkbox to Select/unselect all match people on Uniquify people task [#1921]
@@ -741,7 +824,8 @@ This project <em>does not yet</em> adheres to [Semantic Versioning](https://semv
 
 [#1532]: https://github.com/SpeciesFileGroup/taxonworks/issues/1532
 
-[unreleased]: https://github.com/SpeciesFileGroup/taxonworks/compare/v0.15.1...development
+[unreleased]: https://github.com/SpeciesFileGroup/taxonworks/compare/v0.16.0...development
+[0.16.0]: https://github.com/SpeciesFileGroup/taxonworks/compare/v0.15.1...v0.16.0
 [0.15.1]: https://github.com/SpeciesFileGroup/taxonworks/compare/v0.15.0...v0.15.1
 [0.15.0]: https://github.com/SpeciesFileGroup/taxonworks/compare/v0.14.1...v0.15.0
 [0.14.1]: https://github.com/SpeciesFileGroup/taxonworks/compare/v0.14.0...v0.14.1

Gemfile

@@ -27,7 +27,7 @@ gem 'rmagick', '~> 4.0'
 # Geo
 gem 'ffi-geos', '~> 2.1.0'
 # gem 'rgeo-shapefile', '~> 0.4.2'  # deprecated? not compatible- perhaps only used in
-gem 'rgeo', '~> 2.1'
+gem 'rgeo', '~> 2.2'
 gem 'rgeo-geojson', '~> 2.1', '>= 2.1.1'
 gem 'rgeo-proj4', '~> 2.0'
 gem 'postgresql_cursor', '~> 0.6.1'
@@ -44,7 +44,7 @@ gem 'exception_notification', '~> 4.4'
 
 # Models
 gem 'bcrypt', '~> 3.1.11'
-gem 'closure_tree', github: 'ClosureTree/closure_tree', ref: '15b253e' # '~> 7.0'
+gem 'closure_tree', '~> 7.0'
 
 gem 'delayed_job_active_record', '~> 4.1.3'
 gem 'validates_timeliness', '~> 4.1', '>= 4.1.1'
@@ -59,7 +59,7 @@ gem 'shortener', '~> 0.8.0'
 gem 'sprockets-rails', '~> 3.2.0'
 gem 'sprockets', '~> 3.7.2' # TODO: Cannot use '~> 4.0' (app fails to initialize properly)
 gem 'sprockets-es6', '~> 0.9.2', require: 'sprockets/es6'
-gem 'webpacker', '>= 4.0.x'
+gem 'webpacker', '~> 5.2', '>= 5.2.1'
 gem 'uglifier', '~> 4.2'
 
 gem 'jquery-rails', '~> 4.3.3'
@@ -87,13 +87,17 @@ gem 'best_in_place', '~> 3.1.1'
 gem 'redcarpet', '~> 3.4'
 gem 'sassc-rails', '~> 2.1.0'
 gem 'waxy', '~> 0.1'
-gem 'rgb'
+gem 'rgb', '~> 0.1'
+
+# Drawing
+gem 'rqrcode', github:'mjy/rqrcode', branch: 'taxonworks'
+gem 'barby', '~> 0.6.8'
 
 # "Bio" and SFG gems
 gem 'taxonifi', '~> 0.5.5'
 gem 'sqed', '0.6.0'
-gem 'dwc-archive', '~> 1.1.1'
-gem 'biodiversity', github:'LocoDelAssembly/biodiversity', branch: 'ipc-mode-rc1'
+gem 'dwc-archive', '~> 1.1', '>= 1.1.2'
+gem 'biodiversity', '~> 5.1', '>= 5.1.1'
 gem 'ruby-units', '~> 2.3.0', require: 'ruby_units/namespaced'
 
 # Global Names
@@ -130,7 +134,7 @@ gem 'parallel_tests', group: [:development, :test]
 group :development do
 # gem 'tunemygc'
   gem 'ruby-prof', '~> 1.2'
-  gem 'better_errors', '~> 2.4'
+  gem 'better_errors', '~> 2.9'
   gem 'binding_of_caller'
   gem 'spring-commands-rspec', '~> 1.0.4'
   gem 'guard-rspec', '~> 4.7.3', require: false
@@ -141,7 +145,7 @@ group :development do
   gem 'rubocop-rspec', '~>1.38'
   gem 'rubocop-faker', '~> 0.2.0'
   gem 'brakeman', '~> 4.6', '>= 4.6.1', require: false
-  gem 'seedbank', git: 'https://github.com/james2m/seedbank'
+  gem 'seedbank', '~> 0.5.0'
 end
 
 group :doc do
@@ -150,7 +154,7 @@ end
 
 group :test do
   gem 'rspec', '~> 3.6'
-  gem 'codecov', require: false, github: 'LocoDelAssembly/codecov-ruby', branch: 'github-actions-branch-detection-fix'
+  gem 'codecov', '~> 0.3.0'
   gem 'simplecov', :require => false
   gem 'capybara', '~> 3.18'
   gem 'timecop', '~> 0.9.1'