Skip to content

Commit

Permalink
Merge branch 'rebased'
Browse files Browse the repository at this point in the history
  • Loading branch information
Surax98 committed Feb 7, 2024
2 parents 8afead6 + 8c066fc commit 9d83925
Show file tree
Hide file tree
Showing 7 changed files with 117 additions and 201 deletions.
2 changes: 1 addition & 1 deletion docs-new/docs/tutorial-users/01-quick-start.md
Original file line number Diff line number Diff line change
Expand Up @@ -214,7 +214,7 @@ What you have to do, is just explicitly allow a pod of yours in the following wa
apiVersion: v1
kind: Pod
metadata:
name: test-pod-cfg-cowsay-dciangot
name: test-pod-cowsay
namespace: vk
annotations:
slurm-job.knoc.io/flags: "--job-name=test-pod-cfg -t 2800 --ntasks=8 --nodes=1 --mem-per-cpu=2000"
Expand Down
128 changes: 1 addition & 127 deletions examples/interlink-slurm/README.md
Original file line number Diff line number Diff line change
@@ -1,127 +1 @@
# SLURM DEMO

## Deploy interlink+SLURM demo locally

__N.B.__ in the demo the oauth2 proxy authN/Z is disabled. DO NOT USE THIS IN PRODUCTION unless you know what you are doing.

### Requirements

- Docker
- Minikube (kubernetes-version 1.24.3)
- Clone interlink repo

```bash
git clone https://github.com/interTwin-eu/interLink.git
```

Move to example location:

```bash
cd interLink/examples/interlink-slurm
```

### Bootstrap a minikube cluster

```bash
minikube start --kubernetes-version=1.24.3
```

### Configure interLink

First of all, you need a valid kubeconfig file to be passed to the interLink docker compose. With minikube you will need the following script (check that `PATH_TO_KUBECONFIG` env is pointing to the correct kubeconfig first), otherwise you can simply copy your own there.

__N.B.__ the kubeconfig file should be a stand-alone one. So the certificate data should be loaded as strings not as path.

```bash
export PATH_TO_KUBECONFIG=$HOME/.kube/config
export CA_DATA=$(cat $HOME/.minikube/ca.crt | base64 -w0)
export CERT_DATA=$(cat $HOME/.minikube/profiles/minikube/client.crt | base64 -w0)
export KEY_DATA=$(cat $HOME/.minikube/profiles/minikube/client.key | base64 -w0)

mkdir -p interlink/config

cp $PATH_TO_KUBECONFIG vk/kubeconfig.yaml
sed 's/certificate-authority:.*/certificate-authority-data: '$CA_DATA'/g' $PATH_TO_KUBECONFIG | sed 's/client-certificate:.*/client-certificate-data: '$CERT_DATA'/g' - | sed 's/client-key:.*/client-key-data: '$KEY_DATA'/g' - > vk/kubeconfig.yaml

chmod 777 vk/kubeconfig.yaml
```

Then you need to provide the interLink IP address that should be reachable from the kubernetes pods. In case of this demo setup, that address __is the address of your machine__

```bash
export INTERLINK_IP_ADDRESS=XXX.XX.X.XXX

sed -i 's/InterlinkURL:.*/InterlinkURL: "http:\/\/'$INTERLINK_IP_ADDRESS'"/g' interlink/config/InterLinkConfig.yaml | sed -i 's/SidecarURL:.*/SidecarURL: "http:\/\/'$INTERLINK_IP_ADDRESS'"/g' interlink/config/InterLinkConfig.yaml

sed -i 's/InterlinkURL:.*/InterlinkURL: "http:\/\/'$INTERLINK_IP_ADDRESS'"/g' vk/InterLinkConfig.yaml | sed -i 's/SidecarURL:.*/SidecarURL: "http:\/\/'$INTERLINK_IP_ADDRESS'"/g' vk/InterLinkConfig.yaml
```

### Deploy virtualKubelet

Create the `vk` namespace:

```bash
kubectl create ns vk
```

Deploy the vk resources on the cluster with:

```bash
kubectl apply -n vk -k vk/
```

Check that both the pods and the node are in ready status

```bash
kubectl get pod -n vk

kubectl get node
```

### Deploy interLink via docker compose

```bash
cd interlink

docker compose up -d
```

Check logs for both interLink APIs and SLURM sidecar:

```bash
docker logs interlink-interlink-1

docker logs interlink-docker-sidecar-1
```

### Deploy a sample application

```bash
kubectl apply -f ../test_pod.yaml
```

Then observe the application running and eventually succeeding via:

```bash
kubectl get pod -n vk --watch
```

When finished, interrupt the watch with `Ctrl+C` and retrieve the logs with:

```bash
kubectl logs -n vk test-pod-cfg-cowsay-dciangot
```

Also you can see with `squeue --me` the jobs appearing on the `interlink-docker-sidecar-1` container with:

```bash
docker exec interlink-docker-sidecar-1 squeue --me
```

Or, if you need more debug, you can log into the sidecar and look for your POD_UID folder in `.local/interlink/jobs`:

```bash
docker exec -ti interlink-docker-sidecar-1 bash

ls -altrh .local/interlink/jobs
```
Check [here](/docs-new/docs/tutorial-users/01-quick-start.md) for a Quick Start tutorial!
28 changes: 28 additions & 0 deletions examples/interlink-slurm/test_deployment.yaml
Original file line number Diff line number Diff line change
@@ -0,0 +1,28 @@
apiVersion: apps/v1
kind: Deployment
metadata:
name: test-deployment-cowsay
namespace: vk
spec:
replicas: 5
selector:
matchLabels:
app: sleep-ba
template:
metadata:
labels:
app: sleep-ba
spec:
containers:
- image: docker://ghcr.io/grycap/cowsay
command: ["/bin/sh"]
args: ["-c", "\"touch /tmp/test.txt && sleep 60 && echo \\\"hello muu\\\" | /usr/games/cowsay \" " ]
imagePullPolicy: Always
name: cowsayo
nodeSelector:
kubernetes.io/hostname: test-vk
tolerations:
- key: virtual-node.interlink/no-schedule
operator: Exists
- key: virtual-kubelet.io/provider
operator: Exists
2 changes: 1 addition & 1 deletion examples/interlink-slurm/test_pod.yaml
Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
apiVersion: v1
kind: Pod
metadata:
name: test-pod-cfg-cowsay-dciangot
name: test-pod-cowsay
namespace: vk
annotations:
slurm-job.knoc.io/flags: "--job-name=test-pod-cfg -t 2800 --ntasks=8 --nodes=1 --mem-per-cpu=2000"
Expand Down
18 changes: 9 additions & 9 deletions go.mod
Original file line number Diff line number Diff line change
Expand Up @@ -16,9 +16,10 @@ require (
google.golang.org/grpc v1.58.3
gopkg.in/yaml.v2 v2.4.0
k8s.io/api v0.28.2
k8s.io/apimachinery v0.29.1
k8s.io/apimachinery v0.28.2
k8s.io/client-go v0.28.2
k8s.io/klog v1.0.0
k8s.io/kubernetes v1.29.1
)

require (
Expand All @@ -31,7 +32,7 @@ require (
github.com/cespare/xxhash/v2 v2.2.0 // indirect
github.com/davecgh/go-spew v1.1.1 // indirect
github.com/emicklei/go-restful/v3 v3.11.0 // indirect
github.com/go-logr/logr v1.4.1 // indirect
github.com/go-logr/logr v1.3.0 // indirect
github.com/go-logr/stdr v1.2.2 // indirect
github.com/go-openapi/jsonpointer v0.20.0 // indirect
github.com/go-openapi/jsonreference v0.20.2 // indirect
Expand All @@ -55,7 +56,6 @@ require (
github.com/modern-go/concurrent v0.0.0-20180306012644-bacd9c7ef1dd // indirect
github.com/modern-go/reflect2 v1.0.2 // indirect
github.com/munnerz/goautoneg v0.0.0-20191010083416-a7dc8b61c822 // indirect
github.com/mxk/go-flowrate v0.0.0-20140419014527-cca7078d478f // indirect
github.com/pkg/errors v0.9.1 // indirect
github.com/prometheus/client_golang v1.16.0 // indirect
github.com/prometheus/client_model v0.4.0 // indirect
Expand All @@ -69,11 +69,11 @@ require (
go.opentelemetry.io/otel/trace v1.19.0 // indirect
go.opentelemetry.io/proto/otlp v1.0.0 // indirect
golang.org/x/exp v0.0.0-20231006140011-7918f672742d // indirect
golang.org/x/net v0.20.0 // indirect
golang.org/x/net v0.19.0 // indirect
golang.org/x/oauth2 v0.12.0 // indirect
golang.org/x/sync v0.5.0 // indirect
golang.org/x/sys v0.16.0 // indirect
golang.org/x/term v0.16.0 // indirect
golang.org/x/sys v0.15.0 // indirect
golang.org/x/term v0.15.0 // indirect
golang.org/x/text v0.14.0 // indirect
golang.org/x/time v0.3.0 // indirect
google.golang.org/appengine v1.6.8 // indirect
Expand All @@ -84,10 +84,10 @@ require (
gopkg.in/yaml.v3 v3.0.1 // indirect
k8s.io/apiserver v0.28.2 // indirect
k8s.io/component-base v0.28.2 // indirect
k8s.io/klog/v2 v2.120.1 // indirect
k8s.io/klog/v2 v2.110.1 // indirect
k8s.io/kube-openapi v0.0.0-20231010175941-2dd684a91f00 // indirect
k8s.io/utils v0.0.0-20240102154912-e7106e64919e // indirect
k8s.io/utils v0.0.0-20230726121419-3b25d923346b // indirect
sigs.k8s.io/json v0.0.0-20221116044647-bc3834ca7abd // indirect
sigs.k8s.io/structured-merge-diff/v4 v4.4.1 // indirect
sigs.k8s.io/yaml v1.3.0 // indirect
)
)
34 changes: 17 additions & 17 deletions go.sum
Original file line number Diff line number Diff line change
Expand Up @@ -48,8 +48,8 @@ github.com/evanphx/json-patch/v5 v5.6.0 h1:b91NhWfaz02IuVxO9faSllyAtNXHMPkC5J8sJ
github.com/evanphx/json-patch/v5 v5.6.0/go.mod h1:G79N1coSVB93tBe7j6PhzjmR3/2VvlbKOFpnXhI9Bw4=
github.com/go-logr/logr v0.1.0/go.mod h1:ixOQHD9gLJUVQQ2ZOR7zLEifBX6tGkNJF4QyIY7sIas=
github.com/go-logr/logr v1.2.2/go.mod h1:jdQByPbusPIv2/zmleS9BjJVeZ6kBagPoEUsqbVz/1A=
github.com/go-logr/logr v1.4.1 h1:pKouT5E8xu9zeFC39JXRDukb6JFQPXM5p5I91188VAQ=
github.com/go-logr/logr v1.4.1/go.mod h1:9T104GzyrTigFIr8wt5mBrctHMim0Nb2HLGrmQ40KvY=
github.com/go-logr/logr v1.3.0 h1:2y3SDp0ZXuc6/cjLSZ+Q3ir+QB9T/iG5yYRXqsagWSY=
github.com/go-logr/logr v1.3.0/go.mod h1:9T104GzyrTigFIr8wt5mBrctHMim0Nb2HLGrmQ40KvY=
github.com/go-logr/stdr v1.2.2 h1:hSWxHoqTgW2S2qGc0LTAI563KZ5YKYRhT3MFKZMbjag=
github.com/go-logr/stdr v1.2.2/go.mod h1:mMo/vtBO5dYbehREoey6XUKy/eSumjCCveDpRre4VKE=
github.com/go-openapi/jsonpointer v0.19.6/go.mod h1:osyAmYz/mB/C3I+WsTTSgw1ONzaLJoLCyoi6/zppojs=
Expand Down Expand Up @@ -140,8 +140,6 @@ github.com/modern-go/reflect2 v1.0.2 h1:xBagoLtFs94CBntxluKeaWgTMpvLxC4ur3nMaC9G
github.com/modern-go/reflect2 v1.0.2/go.mod h1:yWuevngMOJpCy52FWWMvUC8ws7m/LJsjYzDa0/r8luk=
github.com/munnerz/goautoneg v0.0.0-20191010083416-a7dc8b61c822 h1:C3w9PqII01/Oq1c1nUAm88MOHcQC9l5mIlSMApZMrHA=
github.com/munnerz/goautoneg v0.0.0-20191010083416-a7dc8b61c822/go.mod h1:+n7T8mK8HuQTcFwEeznm/DIxMOiR9yIdICNftLE1DvQ=
github.com/mxk/go-flowrate v0.0.0-20140419014527-cca7078d478f h1:y5//uYreIhSUg3J1GEMiLbxo1LJaP8RfCpH6pymGZus=
github.com/mxk/go-flowrate v0.0.0-20140419014527-cca7078d478f/go.mod h1:ZdcZmHo+o7JKHSa8/e818NopupXU1YMK5fe1lsApnBw=
github.com/onsi/ginkgo/v2 v2.13.0 h1:0jY9lJquiL8fcf3M4LAXN5aMlS/b2BV86HFFPCPMgE4=
github.com/onsi/ginkgo/v2 v2.13.0/go.mod h1:TE309ZR8s5FsKKpuB1YAQYBzCaAfUgatB/xlT/ETL/o=
github.com/onsi/gomega v1.29.0 h1:KIA/t2t5UBzoirT4H9tsML45GEbo3ouUnBHsCfD2tVg=
Expand Down Expand Up @@ -227,8 +225,8 @@ golang.org/x/net v0.0.0-20201021035429-f5854403a974/go.mod h1:sp8m0HH+o8qH0wwXwY
golang.org/x/net v0.0.0-20201110031124-69a78807bb2b/go.mod h1:sp8m0HH+o8qH0wwXwYZr8TS3Oi6o0r6Gce1SSxlDquU=
golang.org/x/net v0.0.0-20210226172049-e18ecbb05110/go.mod h1:m0MpNAwzfU5UDzcl9v0D8zg8gWTRqZa9RBIspLL5mdg=
golang.org/x/net v0.0.0-20220722155237-a158d28d115b/go.mod h1:XRhObCWvk6IyKnWLug+ECip1KBveYUHfp+8e9klMJ9c=
golang.org/x/net v0.20.0 h1:aCL9BSgETF1k+blQaYUBx9hJ9LOGP3gAVemcZlf1Kpo=
golang.org/x/net v0.20.0/go.mod h1:z8BVo6PvndSri0LbOE3hAn0apkU+1YvI6E70E9jsnvY=
golang.org/x/net v0.19.0 h1:zTwKpTd2XuCqf8huc7Fo2iSy+4RHPd10s4KzeTnVr1c=
golang.org/x/net v0.19.0/go.mod h1:CfAk/cbD4CthTvqiEl8NpboMuiuOYsAr/7NOjZJtv1U=
golang.org/x/oauth2 v0.0.0-20180821212333-d2e6202438be/go.mod h1:N/0e6XlmueqKjAGxoOufVs8QHGRruUQn6yWY3a++T0U=
golang.org/x/oauth2 v0.12.0 h1:smVPGxink+n1ZI5pkQa8y6fZT0RW0MgCO5bFpepy4B4=
golang.org/x/oauth2 v0.12.0/go.mod h1:A74bZ3aGXgCY0qaIC9Ahg6Lglin4AMAco8cIv9baba4=
Expand All @@ -251,12 +249,12 @@ golang.org/x/sys v0.0.0-20211025201205-69cdffdb9359/go.mod h1:oPkhp1MJrh7nUepCBc
golang.org/x/sys v0.0.0-20220520151302-bc2c85ada10a/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg=
golang.org/x/sys v0.0.0-20220715151400-c0bba94af5f8/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg=
golang.org/x/sys v0.0.0-20220722155257-8c9f86f7a55f/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg=
golang.org/x/sys v0.16.0 h1:xWw16ngr6ZMtmxDyKyIgsE93KNKz5HKmMa3b8ALHidU=
golang.org/x/sys v0.16.0/go.mod h1:/VUhepiaJMQUp4+oa/7Zr1D23ma6VTLIYjOOTFZPUcA=
golang.org/x/sys v0.15.0 h1:h48lPFYpsTvQJZF4EKyI4aLHaev3CxivZmv7yZig9pc=
golang.org/x/sys v0.15.0/go.mod h1:/VUhepiaJMQUp4+oa/7Zr1D23ma6VTLIYjOOTFZPUcA=
golang.org/x/term v0.0.0-20201126162022-7de9c90e9dd1/go.mod h1:bj7SfCRtBDWHUb9snDiAeCFNEtKQo2Wmx5Cou7ajbmo=
golang.org/x/term v0.0.0-20210927222741-03fcf44c2211/go.mod h1:jbD1KX2456YbFQfuXm/mYQcufACuNUgVhRMnK/tPxf8=
golang.org/x/term v0.16.0 h1:m+B6fahuftsE9qjo0VWp2FW0mB3MTJvR0BaMQrq0pmE=
golang.org/x/term v0.16.0/go.mod h1:yn7UURbUtPyrVJPGPq404EukNFxcm/foM+bV/bfcDsY=
golang.org/x/term v0.15.0 h1:y/Oo/a/q3IXu26lQgl04j/gjuBDOBlx7X6Om1j2CPW4=
golang.org/x/term v0.15.0/go.mod h1:BDl952bC7+uMoWR75FIrCDx79TPU9oHkTZ9yRbYOrX0=
golang.org/x/text v0.3.0/go.mod h1:NqM8EUOU14njkJ3fqMW+pc6Ldnwhi/IjpwHt7yyuwOQ=
golang.org/x/text v0.3.3/go.mod h1:5Zoc/QRtKVWzQhOtBMvqHzDpF6irO9z98xDceosuGiQ=
golang.org/x/text v0.3.7/go.mod h1:u+2+/6zg+i71rQMx5EYifcz6MCKuco9NR6JIITiCfzQ=
Expand Down Expand Up @@ -334,8 +332,8 @@ k8s.io/api v0.28.2 h1:9mpl5mOb6vXZvqbQmankOfPIGiudghwCoLl1EYfUZbw=
k8s.io/api v0.28.2/go.mod h1:RVnJBsjU8tcMq7C3iaRSGMeaKt2TWEUXcpIt/90fjEg=
k8s.io/apiextensions-apiserver v0.27.2 h1:iwhyoeS4xj9Y7v8YExhUwbVuBhMr3Q4bd/laClBV6Bo=
k8s.io/apiextensions-apiserver v0.27.2/go.mod h1:Oz9UdvGguL3ULgRdY9QMUzL2RZImotgxvGjdWRq6ZXQ=
k8s.io/apimachinery v0.29.1 h1:KY4/E6km/wLBguvCZv8cKTeOwwOBqFNjwJIdMkMbbRc=
k8s.io/apimachinery v0.29.1/go.mod h1:6HVkd1FwxIagpYrHSwJlQqZI3G9LfYWRPAkUvLnXTKU=
k8s.io/apimachinery v0.28.2 h1:KCOJLrc6gu+wV1BYgwik4AF4vXOlVJPdiqn0yAWWwXQ=
k8s.io/apimachinery v0.28.2/go.mod h1:RdzF87y/ngqk9H4z3EL2Rppv5jj95vGS/HaFXrLDApU=
k8s.io/apiserver v0.28.2 h1:rBeYkLvF94Nku9XfXyUIirsVzCzJBs6jMn3NWeHieyI=
k8s.io/apiserver v0.28.2/go.mod h1:f7D5e8wH8MWcKD7azq6Csw9UN+CjdtXIVQUyUhrtb+E=
k8s.io/client-go v0.28.2 h1:DNoYI1vGq0slMBN/SWKMZMw0Rq+0EQW6/AK4v9+3VeY=
Expand All @@ -344,17 +342,19 @@ k8s.io/component-base v0.28.2 h1:Yc1yU+6AQSlpJZyvehm/NkJBII72rzlEsd6MkBQ+G0E=
k8s.io/component-base v0.28.2/go.mod h1:4IuQPQviQCg3du4si8GpMrhAIegxpsgPngPRR/zWpzc=
k8s.io/klog v1.0.0 h1:Pt+yjF5aB1xDSVbau4VsWe+dQNzA0qv1LlXdC2dF6Q8=
k8s.io/klog v1.0.0/go.mod h1:4Bi6QPql/J/LkTDqv7R/cd3hPo4k2DG6Ptcz060Ez5I=
k8s.io/klog/v2 v2.120.1 h1:QXU6cPEOIslTGvZaXvFWiP9VKyeet3sawzTOvdXb4Vw=
k8s.io/klog/v2 v2.120.1/go.mod h1:3Jpz1GvMt720eyJH1ckRHK1EDfpxISzJ7I9OYgaDtPE=
k8s.io/klog/v2 v2.110.1 h1:U/Af64HJf7FcwMcXyKm2RPM22WZzyR7OSpYj5tg3cL0=
k8s.io/klog/v2 v2.110.1/go.mod h1:YGtd1984u+GgbuZ7e08/yBuAfKLSO0+uR1Fhi6ExXjo=
k8s.io/kube-openapi v0.0.0-20231010175941-2dd684a91f00 h1:aVUu9fTY98ivBPKR9Y5w/AuzbMm96cd3YHRTU83I780=
k8s.io/kube-openapi v0.0.0-20231010175941-2dd684a91f00/go.mod h1:AsvuZPBlUDVuCdzJ87iajxtXuR9oktsTctW/R9wwouA=
k8s.io/utils v0.0.0-20240102154912-e7106e64919e h1:eQ/4ljkx21sObifjzXwlPKpdGLrCfRziVtos3ofG/sQ=
k8s.io/utils v0.0.0-20240102154912-e7106e64919e/go.mod h1:OLgZIPagt7ERELqWJFomSt595RzquPNLL48iOWgYOg0=
k8s.io/kubernetes v1.29.1 h1:fxJFVb8uqbYZDYHpwIsAndBQs360cQGb0xa1gYFh3fo=
k8s.io/kubernetes v1.29.1/go.mod h1:xZPKU0yO0CBbLTnbd+XGyRmmtmaVuJykDb8gNCkeeUE=
k8s.io/utils v0.0.0-20230726121419-3b25d923346b h1:sgn3ZU783SCgtaSJjpcVVlRqd6GSnlTLKgpAAttJvpI=
k8s.io/utils v0.0.0-20230726121419-3b25d923346b/go.mod h1:OLgZIPagt7ERELqWJFomSt595RzquPNLL48iOWgYOg0=
sigs.k8s.io/controller-runtime v0.15.0 h1:ML+5Adt3qZnMSYxZ7gAverBLNPSMQEibtzAgp0UPojU=
sigs.k8s.io/controller-runtime v0.15.0/go.mod h1:7ngYvp1MLT+9GeZ+6lH3LOlcHkp/+tzA/fmHa4iq9kk=
sigs.k8s.io/json v0.0.0-20221116044647-bc3834ca7abd h1:EDPBXCAspyGV4jQlpZSudPeMmr1bNJefnuqLsRAsHZo=
sigs.k8s.io/json v0.0.0-20221116044647-bc3834ca7abd/go.mod h1:B8JuhiUyNFVKdsE8h686QcCxMaH6HrOAZj4vswFpcB0=
sigs.k8s.io/structured-merge-diff/v4 v4.4.1 h1:150L+0vs/8DA78h1u02ooW1/fFq/Lwr+sGiqlzvrtq4=
sigs.k8s.io/structured-merge-diff/v4 v4.4.1/go.mod h1:N8hJocpFajUSSeSJ9bOZ77VzejKZaXsTtZo4/u7Io08=
sigs.k8s.io/yaml v1.3.0 h1:a2VclLzOGrwOHDiV8EfBGhvjHvP46CtW5j6POvhYGGo=
sigs.k8s.io/yaml v1.3.0/go.mod h1:GeOyir5tyXNByN85N/dRIT9es5UQNerPYEKK56eTBm8=
sigs.k8s.io/yaml v1.3.0/go.mod h1:GeOyir5tyXNByN85N/dRIT9es5UQNerPYEKK56eTBm8=
Loading

0 comments on commit 9d83925

Please sign in to comment.