SBOL Utilities 1.0-alpha7

Early release of SBOL Utilities with four utilities:

• graph-sbol uses graphviz to render the object tree in an SBOL Document.
• excel-to-sbol extracts SBOL parts and libraries from an Excel file (an SBOL3 version of the SBOL2 Excel-to-SBOL utility)
• sbol-expand-derivations searches through an SBOL file for CombinatorialDerivation objects and expands them to create a library of all of the specific constructs.
• sbol-calculate-sequences attempts to calculate the sequence of any DNA Component that can be fully specified from the sequences of its sub-components.

New this release:

• sbol-calculate-sequences utility
• smarter handling of extensions

SBOL Utilities 1.0-alpha6

Early release of SBOL Utilities with three utilities:

• graph-sbol uses graphviz to render the object tree in an SBOL Document.
• excel-to-sbol extracts SBOL parts and libraries from an Excel file (an SBOL3 version of the SBOL2 Excel-to-SBOL utility)
• sbol-expand-derivations searches through an SBOL file for CombinatorialDerivation objects and expands them to create a library of all of the specific constructs.

New this release:

• support for direct use of SynBioHub as a source in excel-to-sbol
• helper function for stripping SBOL2 versions from URIs

SBOL Utilities 1.0-alpha5

Early release of SBOL Utilities with three utilities:

• graph-sbol uses graphviz to render the object tree in an SBOL Document.
• excel-to-sbol extracts SBOL parts and libraries from an Excel file (an SBOL3 version of the SBOL2 Excel-to-SBOL utility)
• sbol-expand-derivations searches through an SBOL file for CombinatorialDerivation objects and expands them to create a library of all of the specific constructs.

New this release:

• faster term lookups
• generated collection displayIDs exposed as constants
• backbone/locus column can be combinatorial
• refer to parts by either displayID or name
• allow imported parts to retain source URI rather than forcing reminting
• helper functions for sequence alphabet validation

SBOL Utilities 1.0-alpha4

Early release of SBOL Utilities with three utilities:

• graph-sbol uses graphviz to render the object tree in an SBOL Document.
• excel-to-sbol extracts SBOL parts and libraries from an Excel file (an SBOL3 version of the SBOL2 Excel-to-SBOL utility)
• sbol-expand-derivations searches through an SBOL file for CombinatorialDerivation objects and expands them to create a library of all of the specific constructs.

New this release: excel-to-sbol can convert any name to a legal displayID

SBOL Utilities 1.0-alpha3

Early release of SBOL Utilities with three utilities:

• graph-sbol uses graphviz to render the object tree in an SBOL Document.
• excel-to-sbol extracts SBOL parts and libraries from an Excel file (an SBOL3 version of the SBOL2 Excel-to-SBOL utility)
• sbol-expand-derivations searches through an SBOL file for CombinatorialDerivation objects and expands them to create a library of all of the specific constructs.