diff --git a/content/sbolv-10-years/_index.md b/content/sbolv-10-years/_index.md index 5de1644d..8ab86b0b 100644 --- a/content/sbolv-10-years/_index.md +++ b/content/sbolv-10-years/_index.md @@ -28,8 +28,8 @@ For each manuscript, we: - **Reviewed the Main Manuscript:** Focused on the published figures. - **Counted the Figures:** Recorded the total number of images per paper. - **Assessed SBOL Visual Compatibility:** Identified which figures could be considered as SBOL Visual images. -- **Checked Compliance:** Determined whether SBOL Visual complaint figures followed the SBOL Visual standard -- **Checked Best Practices:** Determined whether SBOL Visual complaint figures followed recommended SBOL Visual best practices. +- **Checked Compliance:** Determined whether SBOL Visual compliant figures followed the SBOL Visual standard +- **Checked Best Practices:** Determined whether SBOL Visual compliant figures followed recommended SBOL Visual best practices. We have also listed the [guidelines we followed while evaluating the figures.](guidelines) diff --git a/content/sbolv-10-years/acs-2012/index.md b/content/sbolv-10-years/acs-2012/index.md index 9ac36c3c..994a411b 100644 --- a/content/sbolv-10-years/acs-2012/index.md +++ b/content/sbolv-10-years/acs-2012/index.md @@ -25,26 +25,26 @@ header: ## January -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Engineering Artificial Small RNAs for Conditional Gene Silencing in Escherichia coli|1|0|| |j5 DNA Assembly Design Automation Software|3|1|| ## April -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |SYNZIP Protein Interaction Toolbox: in Vitro and in Vivo Specifications of Heterospecific Coiled-Coil Interaction Domains|1|0|| ## July -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |ePathBrick: A Synthetic Biology Platform for Engineering Metabolic Pathways in E. coli|4|0|| ## August -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |An End-to-End Workflow for Engineering of Biological Networks from High-Level Specifications|4|2|| |Computational Modeling of Synthetic Microbial Biofilms|1|1|:star:| @@ -53,19 +53,19 @@ header: ## September -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |A Synthetic Biology Approach to Understanding Cellular Information Processing|2|0|| ## October -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Stable Maintenance of Multiple Plasmids in E. coli Using a Single Selective Marker|2|0|| ## November -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Rational Design of Escherichia coli for l-Isoleucine Production|1|1|:star:| |Genetic Circuit Performance under Conditions Relevant for Industrial Bioreactors|1|1|:star:| diff --git a/content/sbolv-10-years/acs-2013/index.md b/content/sbolv-10-years/acs-2013/index.md index 8693cb5b..ba3244cd 100644 --- a/content/sbolv-10-years/acs-2013/index.md +++ b/content/sbolv-10-years/acs-2013/index.md @@ -25,20 +25,20 @@ header: ## February -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Synthesizing Biomolecule-Based Boolean Logic Gates|3|3|:star:| |Self-Assembly of Synthetic Metabolons through Synthetic Protein Scaffolds: One-Step Purification, Co-immobilization, and Substrate Channeling|2|2|:star:| ## March -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Tuning Primary Metabolism for Heterologous Pathway Productivity|1|0|| ## May -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Dynamic Modeling of Cellular Populations within iBioSim|1|0|| |AutoBioCAD: Full Biodesign Automation of Genetic Circuits|2|2|:star:| @@ -47,19 +47,19 @@ header: ## June -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Pigeon: A Design Visualizer for Synthetic Biology|1|1|:star:| ## July -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Synthetic Biology of Antimicrobial Discovery|1|1|:star:| ## August -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Synthetic Gene Circuit-Mediated Monitoring of Endogenous Metabolites: Identification of GAL11 as a Novel Multicopy Enhancer of S-Adenosylmethionine Level in Yeast|3|3|:star:| |Retroactivity Controls the Temporal Dynamics of Gene Transcription|1|0|| @@ -67,14 +67,14 @@ header: ## September -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Randomized BioBrick Assembly: A Novel DNA Assembly Method for Randomizing and Optimizing Genetic Circuits and Metabolic Pathways|5|5|:star:| |Visualization of Evolutionary Stability Dynamics and Competitive Fitness of Escherichia coli Engineered with Randomized Multigene Circuits|2|2|:star:| ## October -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Tuning Response Curves for Synthetic Biology|3|0|| |Engineering the esaR Promoter for Tunable Quorum Sensing-Dependent Gene Expression|1|0|| @@ -84,7 +84,7 @@ header: ## November -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Discovery of Cryptic Polyketide Metabolites from Dermatophytes Using Heterologous Expression in Aspergillus nidulans|2|2|:star:| |Sequence, Cloning, and Analysis of the Fluvirucin B1 Polyketide Synthase from Actinomadura vulgaris|1|1|:star:| @@ -94,7 +94,7 @@ header: ## December -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Artificial Conversion of the Mating-Type of Saccharomyces cerevisiae without Autopolyploidization|4|0|| |Cell Polarity-Driven Instability Generates Self-Organized, Fractal Patterning of Cell Layers|1|0|| diff --git a/content/sbolv-10-years/acs-2014/index.md b/content/sbolv-10-years/acs-2014/index.md index 9926b560..219dc3cd 100644 --- a/content/sbolv-10-years/acs-2014/index.md +++ b/content/sbolv-10-years/acs-2014/index.md @@ -25,20 +25,20 @@ header: ## January -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Taking Control over Control: Use of Product Sensing in Single Cells to Remove Flux Control at Key Enzymes in Biosynthesis Pathways|1|1|:star:| ## February -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Bi-HAC Vector System toward Gene and Cell Therapy|3|0|| |Engineered DNA Sequence Syntax Inspector|2|2|:star:| ## March -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Using Synthetic Biological Parts and Microbioreactors to Explore the Protein Expression Characteristics of Escherichia coli|1|1|:star:| |Improving the Gene-Regulation Ability of Small RNAs by Scaffold Engineering in Escherichia coli|2|2|:star:| @@ -46,7 +46,7 @@ header: ## April -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Engineering Multicellular Logic in Bacteria with Metabolic Wires|2|2|:star:| |Evolved Quorum Sensing Regulator, LsrR, for Altered Switching Functions|1|0|| @@ -56,20 +56,20 @@ header: ## May -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Optimization of a Yeast RNA Interference System for Controlling Gene Expression and Enabling Rapid Metabolic Engineering|1|1|:star:| |MicroRNA-Based Single-Gene Circuits Buffer Protein Synthesis Rates against Perturbations|2|0|| ## June -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Gene Position More Strongly Influences Cell-Free Protein Expression from Operons than T7 Transcriptional Promoter Strength|2|2|:star:| ## August -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |PR-PR: Cross-Platform Laboratory Automation System|2|2|:star:| |Optimal Part and Module Selection for Synthetic Gene Circuit Design Automation|2|1|| @@ -77,21 +77,21 @@ header: ## September -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |General Applicability of Synthetic Gene-Overexpression for Cell-Type Ratio Control via Reprogramming|1|0|| |Framework for Engineering Finite State Machines in Gene Regulatory Networks|3|1|| ## October -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Development of an Artificial Calcium-Dependent Transcription Factor To Detect Sustained Intracellular Calcium Elevation|1|0|| |Rule-Based Design of Synthetic Transcription Factors in Eukaryotes|1|0|| ## November -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Near-infrared Light Responsive Synthetic c-di-GMP Module for Optogenetic Applications|3|3|:star:| |Refactoring and Optimization of Light-Switchable Escherichia coli Two-Component Systems|2|1|| @@ -99,7 +99,7 @@ header: ## December -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Systematic Transfer of Prokaryotic Sensors and Circuits to Mammalian Cells|3|3|:star:| |Specific Gene Repression by CRISPRi System Transferred through Bacterial Conjugation|1|0|| diff --git a/content/sbolv-10-years/acs-2015/index.md b/content/sbolv-10-years/acs-2015/index.md index a32c549f..c4e2f5b4 100644 --- a/content/sbolv-10-years/acs-2015/index.md +++ b/content/sbolv-10-years/acs-2015/index.md @@ -25,7 +25,7 @@ header: ## January -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Model-Driven Engineering of Gene Expression from RNA Replicons|1|0|| |Proposed Data Model for the Next Version of the Synthetic Biology Open Language|4|4|:star:| @@ -33,7 +33,7 @@ header: ## February -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |A Synthetic Anhydrotetracycline-Controllable Gene Expression System in Ralstonia eutropha H16|4|4|:star:| |Noise Propagation in Synthetic Gene Circuits for Metabolic Control|1|0|| @@ -42,7 +42,7 @@ header: ## March -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |RADOM, an Efficient In Vivo Method for Assembling Designed DNA Fragments up to 10 kb Long in Saccharomyces cerevisiae|4|0|| |Avoidance of Truncated Proteins from Unintended Ribosome Binding Sites within Heterologous Protein Coding Sequences|1|0|| @@ -52,7 +52,7 @@ header: ## April -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Rapid Evaluation of Tyrosine Kinase Activity of Membrane-Integrated Human Epidermal Growth Factor Receptor Using the Yeast Gγ Recruitment System|1|0|| |A Set of Versatile Brick Vectors and Promoters for the Assembly, Expression, and Integration of Synthetic Operons in Methylobacterium extorquens AM1 and Other Alphaproteobacteria|1|0|| @@ -61,7 +61,7 @@ header: ## May -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Rapidly Characterizing the Fast Dynamics of RNA Genetic Circuitry with Cell-Free Transcription–Translation (TX-TL) Systems|6|6|:star:| |Synthetic Tunable Amplifying Buffer Circuit in E. coli|2|0|| @@ -70,7 +70,7 @@ header: ## June -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Accurate Predictions of Genetic Circuit Behavior from Part Characterization and Modular Composition|4|0|| |Expansion of Bisindole Biosynthetic Pathways by Combinatorial Construction|1|0|| @@ -78,7 +78,7 @@ header: ## July -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |BASIC: A New Biopart Assembly Standard for Idempotent Cloning Provides Accurate, Single-Tier DNA Assembly for Synthetic Biology|1|1|:star:| |Rationally Designed MicroRNA-Based Genetic Classifiers Target Specific Neurons in the Brain|1|0|| @@ -86,27 +86,27 @@ header: ## August -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Generating Systems Biology Markup Language Models from the Synthetic Biology Open Language|3|3|:star:| |Genome Calligrapher: A Web Tool for Refactoring Bacterial Genome Sequences for de Novo DNA Synthesis|1|0|| ## September -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Enhanced Protein Production in Escherichia coli by Optimization of Cloning Scars at the Vector–Coding Sequence Junction|1|0|| |Regulation of Bacterial Gene Expression by Protease-Alleviated Spatial Sequestration (PASS)|4|0|| ## October -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Enzymatic Menthol Production: One-Pot Approach Using Engineered Escherichia coli|1|0|| ## November -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Genome Engineering of the 2,3-Butanediol Biosynthetic Pathway for Tight Regulation in Cyanobacteria|5|4|| |A Barcoding Strategy Enabling Higher-Throughput Library Screening by Microscopy|1|0|| @@ -114,7 +114,7 @@ header: ## December -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Synthetic Auxotrophs with Ligand-Dependent Essential Genes for a BL21(DE3) Biosafety Strain|1|0|| |Development of a Synthetic Malonyl-CoA Sensor in Saccharomyces cerevisiae for Intracellular Metabolite Monitoring and Genetic Screening|1|0|| diff --git a/content/sbolv-10-years/acs-2016/index.md b/content/sbolv-10-years/acs-2016/index.md index 5c7518f2..7c824d72 100644 --- a/content/sbolv-10-years/acs-2016/index.md +++ b/content/sbolv-10-years/acs-2016/index.md @@ -25,7 +25,7 @@ header: ## January -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Metabolic Engineering toward Sustainable Production of Nylon-6|1|1|:star:| |Orthogonal Modular Gene Repression in Escherichia coli Using Engineered CRISPR/Cas9|4|0|| @@ -33,13 +33,13 @@ header: ## February -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Slowing Translation between Protein Domains by Increasing Affinity between mRNAs and the Ribosomal Anti-Shine–Dalgarno Sequence Improves Solubility|1|0|| ## March -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Multiple Gene Repression in Cyanobacteria Using CRISPRi|1|1|:star:| |Assays To Detect the Formation of Triphosphates of Unnatural Nucleotides: Application to Escherichia coli Nucleoside Diphosphate Kinase|1|1|:star:| @@ -48,13 +48,13 @@ header: ## April -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Automatic Control of Gene Expression in Mammalian Cells|1|0|| ## June -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Improving Synthetic Biology Communication: Recommended Practices for Visual Depiction and Digital Submission of Genetic Designs|1|1|:star:| |Genotype Specification Language|1|1|:star:| @@ -65,7 +65,7 @@ header: ## July -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Two Distinct Cyclodipeptide Synthases from a Marine Actinomycete Catalyze Biosynthesis of the Same Diketopiperazine Natural Product|1|1|:star:| |Optical Control of Peroxisomal Trafficking|1|0|| @@ -81,14 +81,14 @@ header: ## August -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Using RNA as Molecular Code for Programming Cellular Function|2|2|:star:| |VisBOL: Web-Based Tools for Synthetic Biology Design Visualization|2|2|:star:| ## September -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Programming Surface Chemistry with Engineered Cells|1|1|:star:| |Quorum Sensing Communication Modules for Microbial Consortia|3|2|| @@ -96,7 +96,7 @@ header: ## October -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Mammalian Synthetic Biology: Time for Big MACs|2|2|:star:| |EcoFlex: A Multifunctional MoClo Kit for E. coli Synthetic Biology|2|0|| @@ -107,7 +107,7 @@ header: ## November -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Construction and Characterization of a Synthetic MicroRNA Cluster for Multiplex RNA Interference in Mammalian Cells|4|0|| |A Cell–Cell Communication-Based Screening System for Novel Microbes with Target Enzyme Activities|1|1|:star:| @@ -121,7 +121,7 @@ header: ## December -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |The Geobacillus Plasmid Set: A Modular Toolkit for Thermophile Engineering|1|1|:star:| |Combinatorial Pairwise Assembly Efficiently Generates High Affinity Binders and Enables a “Mix-and-Read” Detection Scheme|1|0|| diff --git a/content/sbolv-10-years/acs-2017/index.md b/content/sbolv-10-years/acs-2017/index.md index 99415487..ca6f2c91 100644 --- a/content/sbolv-10-years/acs-2017/index.md +++ b/content/sbolv-10-years/acs-2017/index.md @@ -25,7 +25,7 @@ header: ## January -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Rapid and Inexpensive Evaluation of Nonstandard Amino Acid Incorporation in Escherichia coli|1|1|:star:| |Designing Synthetic Flexible Gene Regulation Networks Using RNA Devices in Cyanobacteria|1|1|:star:| @@ -34,7 +34,7 @@ header: ## February -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Discovery of a Phosphonoacetic Acid Derived Natural Product by Pathway Refactoring|1|0|| |Direct Combinatorial Pathway Optimization|1|0|| @@ -46,7 +46,7 @@ header: ## March -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Standardized Markerless Gene Integration for Pathway Engineering in Yarrowia lipolytica|1|0|| |Introduction of Premature Stop Codons as an Evolutionary Strategy To Rescue Signaling Network Function|2|0|| @@ -56,7 +56,7 @@ header: ## April -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Engineering a Thermostable Keto Acid Decarboxylase Using Directed Evolution and Computationally Directed Protein Design|1|0|| |Quantitative Tracking of Combinatorially Engineered Populations with Multiplexed Binary Assemblies|1|0|| @@ -64,7 +64,7 @@ header: ## May -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |AGOS: A Plug-and-Play Method for the Assembly of Artificial Gene Operons into Functional Biosynthetic Gene Clusters|3|3|:star:| |Efficient Genome Editing of a Facultative Thermophile Using Mesophilic spCas9|2|1|| @@ -73,7 +73,7 @@ header: ## June -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Engineering Iron Responses in Mammalian Cells by Signal-Induced Protein Proximity|3|0|| |Recursive DNA Assembly Using Protected Oligonucleotide Duplex Assisted Cloning (PODAC)|2|2|:star:| @@ -89,7 +89,7 @@ header: ## July -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |DNAplotlib: Programmable Visualization of Genetic Designs and Associated Data|5|5|:star:| |SBOLDesigner 2: An Intuitive Tool for Structural Genetic Design|3|3|:star:| @@ -107,7 +107,7 @@ header: ## August -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Amplifying Riboswitch Signal Output Using Cellular Wiring|2|2|:star:| |Rational Design of an Ultrasensitive Quorum-Sensing Switch|1|1|:star:| @@ -119,7 +119,7 @@ header: ## September -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Engineering a Native Inducible Expression System in Shewanella oneidensis to Control Extracellular Electron Transfer|2|2|:star:| |Multiplex Genome Editing by Natural Transformation (MuGENT) for Synthetic Biology in Vibrio natriegens|2|2|:star:| @@ -128,7 +128,7 @@ header: ## October -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Developing a Genetically Encoded, Cross-Species Biosensor for Detecting Ammonium and Regulating Biosynthesis of Cyanophycin|2|2|:star:| |Rapid and Programmable Protein Mutagenesis Using Plasmid Recombineering|2|2|:star:| @@ -142,7 +142,7 @@ header: ## November -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |The Timing of Transcriptional Regulation in Synthetic Gene Circuits|3|0|| |A Tug-of-War Mechanism for Pattern Formation in a Genetic Network|2|0|| @@ -155,7 +155,7 @@ header: ## December -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Production of Functional Anti-Ebola Antibodies in Pichia pastoris|1|0|| |Managing the SOS Response for Enhanced CRISPR-Cas-Based Recombineering in E. coli through Transient Inhibition of Host RecA Activity|1|0|| diff --git a/content/sbolv-10-years/acs-2018/index.md b/content/sbolv-10-years/acs-2018/index.md index ef8ba422..302a8787 100644 --- a/content/sbolv-10-years/acs-2018/index.md +++ b/content/sbolv-10-years/acs-2018/index.md @@ -25,7 +25,7 @@ header: ## January -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Multiplexed CRISPR/Cas9 Genome Editing and Gene Regulation Using Csy4 in Saccharomyces cerevisiae|3|0|| |Design and Selection of a Synthetic Feedback Loop for Optimizing Biofuel Tolerance|2|0|| @@ -39,7 +39,7 @@ header: ## February -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Part by Part: Synthetic Biology Parts Used in Solventogenic Clostridia|2|2|:star:| |Gene-Mediated Chemical Communication in Synthetic Protocell Communities|1|1|:star:| @@ -64,7 +64,7 @@ header: ## March -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Labeling RNAs in Live Cells Using Malachite Green Aptamer Scaffolds as Fluorescent Probes|3|3|:star:| |Directed Evolution of Membrane Transport Using Synthetic Selections|1|1|:star:| @@ -78,7 +78,7 @@ header: ## April -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Engineering a Dual Small Molecule Gated ZAP70 Switch in T Cells|1|1|:star:| |Cell-Free Optogenetic Gene Expression System|2|2|:star:| @@ -90,7 +90,7 @@ header: ## May -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Engineering the Ultrasensitive Transcription Factors by Fusing a Modular Oligomerization Domain|1|1|:star:| |Mathematical Modeling of RNA-Based Architectures for Closed Loop Control of Gene Expression|1|0|| @@ -104,7 +104,7 @@ header: ## June -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Engineering a Functional Small RNA Negative Autoregulation Network with Model-Guided Design|2|0|| |An Engineered Device for Indoleacetic Acid Production under Quorum Sensing Signals Enables Cupriavidus pinatubonensis JMP134 To Stimulate Plant Growth|1|1|:star:| @@ -113,7 +113,7 @@ header: ## July -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Rationalizing Context-Dependent Performance of Dynamic RNA Regulatory Devices|2|2|:star:| |Mutually Orthogonal DNA Replication Systems In Vivo|3|0|| @@ -121,7 +121,7 @@ header: ## August -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Predicting Transcriptional Output of Synthetic Multi-input Promoters|3|0|| |Promoter Engineering for Enhanced P(3HB-co-4HB) Production by Halomonas bluephagenesis|2|0|| @@ -130,7 +130,7 @@ header: ## September -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Human Artificial Chromosome with Regulated Centromere: A Tool for Genome and Cancer Studies|6|1|| |A Biosensor Strategy for E. coli Based on Ligand-Dependent Stabilization|1|0|| @@ -147,7 +147,7 @@ header: ## October -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |A Genetically Encoded Protein Polymer for Uranyl Binding and Extraction Based on the SpyTag–SpyCatcher Chemistry|1|1|:star:| |A Genetically Encoded Biosensor for Monitoring Isoprene Production in Engineered Escherichia coli|3|1|| @@ -156,7 +156,7 @@ header: ## November -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Rational Control of Calcium Carbonate Precipitation by Engineered Escherichia coli|1|0|| |Transcription Driven by Reversible Photocontrol of Hyperstable G-Quadruplexes|1|0|| @@ -170,7 +170,7 @@ header: ## December -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Selective Enrichment of Slow-Growing Bacteria in a Metabolism-Wide CRISPRi Library with a TIMER Protein|1|1|:star:| |Cell-Based Biosensor with Dual Signal Outputs for Simultaneous Quantification of Phenylacetic Acid and Phenylethylamine|1|0|| diff --git a/content/sbolv-10-years/acs-2019/index.md b/content/sbolv-10-years/acs-2019/index.md index b38a14f7..e6b22cce 100644 --- a/content/sbolv-10-years/acs-2019/index.md +++ b/content/sbolv-10-years/acs-2019/index.md @@ -25,7 +25,7 @@ header: ## January -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Designing Spatially Distributed Gene Regulatory Networks To Elicit Contrasting Patterns|1|0|| |Machine Learning of Designed Translational Control Allows Predictive Pathway Optimization in Escherichia coli|2|2|:star:| @@ -34,7 +34,7 @@ header: ## February -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Riboswitch Signal Amplification by Controlling Plasmid Copy Number|2|2|:star:| |Building Microbial Hosts for Heterologous Production of N-Methylpyrrolinium|2|0|| @@ -44,7 +44,7 @@ header: ## March -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Characterizing Transcriptional Interference between Converging Genes in Bacteria|4|4|:star:| |Construction of a Nonnatural C60 Carotenoid Biosynthetic Pathway|5|5|:star:| @@ -56,7 +56,7 @@ header: ## April -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Developing Riboswitch-Mediated Gene Regulatory Controls in Thermophilic Bacteria|2|1|| |Spatiotemporal Gene Repression System in the Heterocyst-Forming Multicellular Cyanobacterium Anabaena sp. PCC 7120|2|2|:star:| @@ -69,7 +69,7 @@ header: ## May -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Core Catalysis of the Reductive Glycine Pathway Demonstrated in Yeast|1|0|| |Endocytosing Escherichia coli as a Whole-Cell Biocatalyst of Fatty Acids|2|0|| @@ -78,7 +78,7 @@ header: ## June -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Design and Evaluation of Synthetic Terminators for Regulating Mammalian Cell Transgene Expression|1|0|| |Guiding Biomolecular Interactions in Cells Using de Novo Protein–Protein Interfaces|5|0|| @@ -93,7 +93,7 @@ header: ## July -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |An Automated Biomodel Selection System (BMSS) for Gene Circuit Designs|3|3|:star:| |SBOL-OWL: An Ontological Approach for Formal and Semantic Representation of Synthetic Biology Information|4|4|:star:| @@ -105,7 +105,7 @@ header: ## August -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Synthetic, Context-Dependent Microbial Consortium of Predator and Prey|2|2|:star:| |Inducible Gene Switches with Memory in Human T Cells for Cellular Immunotherapy|4|4|:star:| @@ -115,7 +115,7 @@ header: ## September -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Development of a Vanillate Biosensor for the Vanillin Biosynthesis Pathway in E. coli|2|1|| |A Model for the Spatiotemporal Design of Gene Regulatory Circuits|2|2|:star:| @@ -127,7 +127,7 @@ header: ## October -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Low-Burden Biological Feedback Controllers for Near-Perfect Adaptation|1|1|:star:| |Amelioration of Diabetes in a Murine Model upon Transplantation of Pancreatic β-Cells with Optogenetic Control of Cyclic Adenosine Monophosphate|1|1|:star:| @@ -143,14 +143,14 @@ header: ## November -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Model-Driven Engineering of N-Linked Glycosylation in Chinese Hamster Ovary Cells|2|2|:star:| |In Vitro Transcriptional Regulation via Nucleic-Acid-Based Transcription Factors|4|2|| ## December -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Advancing CRISPR-Based Programmable Platforms beyond Genome Editing in Mammalian Cells|1|0|| |Detecting Changes in the Caenorhabditis elegans Intestinal Environment Using an Engineered Bacterial Biosensor|1|1|:star:| diff --git a/content/sbolv-10-years/acs-2020/index.md b/content/sbolv-10-years/acs-2020/index.md index 003444a1..6ef62601 100644 --- a/content/sbolv-10-years/acs-2020/index.md +++ b/content/sbolv-10-years/acs-2020/index.md @@ -25,7 +25,7 @@ header: ## January -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Point-of-Use Detection of Environmental Fluoride via a Cell-Free Riboswitch-Based Biosensor|3|0|| |Design of Mammalian ON-Riboswitches Based on Tandemly Fused Aptamer and Ribozyme|1|1|:star:| @@ -40,7 +40,7 @@ header: ## February -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |High-Resolution Scanning of Optimal Biosensor Reporter Promoters in Yeast|3|1|| |Light-Inducible Recombinases for Bacterial Optogenetics|2|0|| @@ -58,7 +58,7 @@ header: ## March -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Site-Specific Post-translational Surface Modification of Adeno-Associated Virus Vectors Using Leucine Zippers|1|1|:star:| |Adenosine Triphosphate and Carbon Efficient Route to Second Generation Biofuel Isopentanol|1|0|| @@ -73,7 +73,7 @@ header: ## April -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |A New Biosensor for Stilbenes and a Cannabinoid Enabled by Genome Mining of a Transcriptional Regulator|3|1|| |Balancing Cell Populations Endowed with a Synthetic Toggle Switch via Adaptive Pulsatile Feedback Control|1|0|| @@ -85,7 +85,7 @@ header: ## May -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Multiplex Generation, Tracking, and Functional Screening of Substitution Mutants Using a CRISPR/Retron System|3|3|:star:| |A Synthetic Genetic Circuit Enables Precise Quantification of Direct Repeat Deletion in Bacteria|2|0|| @@ -98,7 +98,7 @@ header: ## June -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Microbial Synthesis of Human-Hormone Melatonin at Gram Scales|1|0|| |Comprehensive Analysis of Genomic Safe Harbors as Target Sites for Stable Expression of the Heterologous Gene in HEK293 Cells|2|0|| @@ -114,7 +114,7 @@ header: ## July -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Assessment of Robustness to Temperature in a Negative Feedback Loop and a Feedforward Loop|2|0|| |Purification of an Intact Human Protein Overexpressed from Its Endogenous Locus via Direct Genome Engineering|1|0|| @@ -135,7 +135,7 @@ header: ## September -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Applications of CRISPR in a Microbial Cell Factory: From Genome Reconstruction to Metabolic Network Reprogramming|3|0|| |FlopR: An Open Source Software Package for Calibration and Normalization of Plate Reader and Flow Cytometry Data|1|1|:star:| @@ -147,7 +147,7 @@ header: ## October -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |In Vivo Feedback Control of an Antithetic Molecular-Titration Motif in Escherichia coli Using Microfluidics|1|1|:star:| |Construction of Fully Segregated Genomic Libraries in Polyploid Organisms Such as Synechocystis sp. PCC 6803|2|0|| @@ -161,7 +161,7 @@ header: ## November -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Multidimensional Characterization of Parts Enhances Modeling Accuracy in Genetic Circuits|3|0|| |Integrative Biosynthetic Gene Cluster Mining to Optimize a Metabolic Pathway to Efficiently Produce l-Homophenylalanine in Escherichia coli|3|0|| @@ -177,7 +177,7 @@ header: ## December -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Living Therapeutics: The Next Frontier of Precision Medicine|2|2|:star:| |A Logic NAND Gate for Controlling Gene Expression in a Circadian Rhythm in Cyanobacteria|3|3|:star:| diff --git a/content/sbolv-10-years/acs-2021/index.md b/content/sbolv-10-years/acs-2021/index.md index 0b8489e7..a5ef58c8 100644 --- a/content/sbolv-10-years/acs-2021/index.md +++ b/content/sbolv-10-years/acs-2021/index.md @@ -25,7 +25,7 @@ header: ## January -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Statistical Design of Experiments for Synthetic Biology|1|1|:star:| |Fine-Tuning Multi-Gene Clusters via Well-Characterized Gene Expression Regulatory Elements: Case Study of the Arginine Synthesis Pathway in C. glutamicum|3|1|| @@ -44,7 +44,7 @@ header: ## February -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Promiscuous Installation of d-Amino Acids in Gene-Encoded Peptides|1|1|:star:| |Biosynthesis of Diverse Type II Polyketide Core Structures in Streptomyces coelicolor M1152|3|3|:star:| @@ -57,7 +57,7 @@ header: ## March -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Expanding the Potential of Mammalian Genome Engineering via Targeted DNA Integration|1|0|| |Small Antisense DNA-Based Gene Silencing Enables Cell-Free Bacteriophage Manipulation and Genome Replication|2|2|:star:| @@ -72,7 +72,7 @@ header: ## April -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Membrane Augmented Cell-Free Systems: A New Frontier in Biotechnology|1|0|| |Engineered Regulon to Enable Autonomous Azide Ion Biosensing, Recombinant Protein Production, and in Vivo Glycoengineering|4|0|| @@ -90,7 +90,7 @@ header: ## May -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Transcription-Factor-based Biosensor Engineering for Applications in Synthetic Biology|4|0|| |Engineered Microbial Routes for Human Milk Oligosaccharides Synthesis|1|0|| @@ -109,7 +109,7 @@ header: ## June -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |A Tail Fiber Engineering Platform for Improved Bacterial Transduction-Based Diagnostic Reagents|2|2|:star:| |Precise Regulation of Cas9-Mediated Genome Engineering by Anti-CRISPR-Based Inducible CRISPR Controllers|1|0|| @@ -129,7 +129,7 @@ header: ## July -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Multilayer Genetic Circuits for Dynamic Regulation of Metabolic Pathways|3|2|| |A Biosensor for Detection of Indole Metabolites|1|1|:star:| @@ -142,7 +142,7 @@ header: ## August -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Genetically Encoding Ultrastable Virus-like Particles Encapsulating Functional DNA Nanostructures in Living Bacteria|2|0|| |Localized Proteolysis for the Construction of Intracellular Asymmetry in Escherichia coli|3|3|:star:| @@ -163,7 +163,7 @@ header: ## September -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Functionalizing Cell-Free Systems with CRISPR-Associated Proteins: Application to RNA-Based Circuit Engineering|7|0|| |High-Titer Production of Olivetolic Acid and Analogs in Engineered Fungal Host Using a Nonplant Biosynthetic Pathway|1|1|:star:| @@ -181,7 +181,7 @@ header: ## October -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Shaping Liposomes by Cell-Free Expressed Bacterial Microtubules|1|1|:star:| |Efficient Production of 2′-Fucosyllactose from l-Fucose via Self-Assembling Multienzyme Complexes in Engineered Escherichia coli|1|1|:star:| @@ -200,7 +200,7 @@ header: ## November -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Toward the Heterologous Biosynthesis of Plant Natural Products: Gene Discovery and Characterization|1|1|:star:| |Engineering Wired Life: Synthetic Biology for Electroactive Bacteria|3|3|:star:| @@ -224,7 +224,7 @@ header: ## December -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Artificial Self-assembling Nanocompartment for Organizing Metabolic Pathways in Yeast|2|2|:star:| |The ProUSER2.0 Toolbox: Genetic Parts and Highly Customizable Plasmids for Synthetic Biology in Bacillus subtilis|1|0|| diff --git a/content/sbolv-10-years/acs-2022/index.md b/content/sbolv-10-years/acs-2022/index.md index c6bdab1e..b33476f6 100644 --- a/content/sbolv-10-years/acs-2022/index.md +++ b/content/sbolv-10-years/acs-2022/index.md @@ -25,7 +25,7 @@ header: ## January -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Synthetic Biology in Chimeric Antigen Receptor T (CAR T) Cell Engineering|3|3|:star:| |Advances in Approaches to Study Chromatin-Mediated Epigenetic Memory|1|0|| @@ -60,7 +60,7 @@ header: ## February -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Combating Infectious Diseases with Synthetic Biology|2|0|| |Construction of Synthetic Microbial Ecosystems and the Regulation of Population Proportion|2|0|| @@ -88,7 +88,7 @@ header: ## March -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Synthetic Genetic Reversible Feynman Gate in a Single E. coli Cell and Its Application in Bacterial to Mammalian Cell Information Transfer|2|1|| |Improving the Robustness of Engineered Bacteria to Nutrient Stress Using Programmed Proteolysis|1|1|:star:| @@ -112,7 +112,7 @@ header: ## April -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Designing Biological Circuits: From Principles to Applications|1|1|:star:| |Bioorthogonal Chemical Epigenetic Modifiers Enable Dose-Dependent CRISPR Targeted Gene Activation in Mammalian Cells|2|1|| @@ -128,7 +128,7 @@ header: ## May -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Synthetic Translational Regulation by Protein-Binding RNA Origami Scaffolds|4|4|:star:| |DeepTESR: A Deep Learning Framework to Predict the Degree of Translational Elongation Short Ramp for Gene Expression Control|1|1|:star:| @@ -144,7 +144,7 @@ header: ## June -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Transcription-Associated Fluorescence-Activated Droplet Sorting for Di-rhamnolipid Hyperproducers|1|1|:star:| |Temporal Expression of Transcription Factor ID2 Improves Natural Killer Cell Differentiation from Human Pluripotent Stem Cells|1|0|| @@ -157,7 +157,7 @@ header: ## July -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |The Growth Dependent Design Constraints of Transcription-Factor-Based Metabolite Biosensors|5|4|| |Optimal LentiCRISPR-Based System for Sequential CRISPR/Cas9 Screens|1|0|| @@ -172,7 +172,7 @@ header: ## August -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Standardization of Synthetic Biology Tools and Assembly Methods for Saccharomyces cerevisiae and Emerging Yeast Species|6|5|| |PeroxiHUB: A Modular Cell-Free Biosensing Platform Using H2O2 as Signal Integrator|2|0|| @@ -196,7 +196,7 @@ header: ## September -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Overcoming Leak Sensitivity in CRISPRi Circuits Using Antisense RNA Sequestration and Regulatory Feedback|4|4|:star:| |Malarial Antibody Detection with an Engineered Yeast Agglutination Assay|1|1|:star:| @@ -216,7 +216,7 @@ header: ## October -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Intestinal Engineered Probiotics as Living Therapeutics: Chassis Selection, Colonization Enhancement, Gene Circuit Design, and Biocontainment|4|1|| |Interaction between the Anchoring Domain of A-Kinase Anchoring Proteins and the Dimerization and Docking Domain of Protein Kinase A: A Potent Tool for Synthetic Biology|1|0|| @@ -242,7 +242,7 @@ header: ## November -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Engineered Spore-Forming Bacillus as a Microbial Vessel for Long-Term DNA Data Storage|2|0|| |Harnessing Escherichia coli’s Native Machinery for Detection of Vitamin C (Ascorbate) Deficiency|2|0|| @@ -260,7 +260,7 @@ header: ## December -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Ribosome Stalling of N-Linked Glycoproteins in Cell-Free Extracts|1|1|:star:| |Robotic Construction and Screening of Lanthipeptide Variant Libraries in Escherichia coli|2|2|:star:| diff --git a/content/sbolv-10-years/acs-2023/index.md b/content/sbolv-10-years/acs-2023/index.md index 70bfad45..30bf1262 100644 --- a/content/sbolv-10-years/acs-2023/index.md +++ b/content/sbolv-10-years/acs-2023/index.md @@ -25,7 +25,7 @@ header: ## January -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Engineering the Biosynthesis of Late-Stage Vinblastine Precursors Precondylocarpine Acetate, Catharanthine, Tabersonine in Nicotiana benthamiana|3|0|| |Continuous Directed Evolution of a Feedback-Resistant Arabidopsis Arogenate Dehydratase in Plantized Escherichia coli|1|0|| @@ -42,7 +42,7 @@ header: ## February -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Circular Guide RNA for Improved Stability and CRISPR-Cas9 Editing Efficiency in Vitro and in Bacteria|1|0|| |A Dueling-Competent Signal-Sensing Module Guides Precise Delivery of Cargo Proteins into Target Cells by Engineered Pseudomonas aeruginosa|1|0|| @@ -58,7 +58,7 @@ header: ## March -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |A Biological OR(XNOR) Logic Gate Couples Carbon Source and Transgene Expression Switching in a Komagataella phaffii (Pichia pastoris) Strain Co-producing Process-Enhancing Lipase and a Virus-like Particle (VLP) Vaccine|1|1|:star:| |Optical Control of Cell Signaling with Red/Far-Red Light-Responsive Optogenetic Tools in Caenorhabditis elegans|1|0|| @@ -75,7 +75,7 @@ header: ## April -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Directed Evolution of Aerotolerance in Sulfide-Dependent Thiazole Synthases|1|1|:star:| |Marine Biofilm Engineered to Produce Current in Response to Small Molecules|3|3|:star:| @@ -92,7 +92,7 @@ header: ## May -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Sourcing Phage-Encoded Terminators Using ONT-cappable-seq for SynBio Applications in Pseudomonas|1|1|:star:| |TFBMiner: A User-Friendly Command Line Tool for the Rapid Mining of Transcription Factor-Based Biosensors|1|1|:star:| @@ -102,7 +102,7 @@ header: ## June -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Engineering Outer Membrane Vesicles to Increase Extracellular Electron Transfer of Shewanella oneidensis|3|0|| |Cell-Free Biosensing Genetic Circuit Coupled with Ribozyme Cleavage Reaction for Rapid and Sensitive Detection of Small Molecules|2|2|:star:| @@ -115,7 +115,7 @@ header: ## July -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Construction and Applications of Mammalian Cell-Based DNA-Encoded Peptide/Protein Libraries|3|0|| |Application of CRISPR in Filamentous Fungi and Macrofungi: From Component Function to Development Potentiality|2|0|| @@ -133,7 +133,7 @@ header: ## August -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Noise Minimization in Cell-Free Gene Expression|3|3|:star:| |Plasmid Copy Number Engineering Accelerates Fungal Polyketide Discovery upon Unnatural Polyketide Biosynthesis|2|0|| @@ -148,7 +148,7 @@ header: ## September -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Dual Input-Controlled Synthetic mRNA Circuit for Bidirectional Protein Expression Regulation|3|0|| |Tailored Synthetic sRNAs Dynamically Tune Multilayer Genetic Circuits|3|0|| @@ -163,7 +163,7 @@ header: ## October -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Signal Amplification for Cell-Free Biosensors, an Analog-to-Digital Converter|3|3|:star:| |Comprehensive Screening of a Light-Inducible Split Cre Recombinase with Domain Insertion Profiling|1|1|:star:| @@ -180,7 +180,7 @@ header: ## November -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Module-Based Polyketide Synthase Engineering for de Novo Polyketide Biosynthesis|2|2|:star:| |Investigating and Modeling the Factors That Affect Genetic Circuit Performance|1|1|:star:| @@ -195,7 +195,7 @@ header: ## December -|Article|No. of SBOL Visual complaint images|No. of SBOL Visual images following Best practices|| +|Article|No. of SBOL Visual compliant images|No. of SBOL Visual images following Best practices|| | :---: | :---: | :---: | :---: | |Automated Platform for the Plasmid Construction Process|1|0|| |Tunable Dynamics in a Multistrain Transcriptional Pulse Generator|1|1|:star:|