diff --git a/NEWS.md b/NEWS.md index 603bde8..46e0448 100644 --- a/NEWS.md +++ b/NEWS.md @@ -4,8 +4,6 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ## Unreleased -- add DOI: [10.5281/zenodo.1308061](https://zenodo.org/record/1308061) - ### Added ### Changed ### Deprecated @@ -15,6 +13,10 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ## BacDiveR 0.5.0 +### Added + +- Syncing of release versions to Zenodo, starting with [10.5281/zenodo.1308061](https://zenodo.org/record/1308061) + ### Changed - The JSON downloads are no longer purged of all space characters pre-emptively diff --git a/docs/articles/BacDive-ing-in_files/figure-html/ggplot-1.png b/docs/articles/BacDive-ing-in_files/figure-html/ggplot-1.png index c88468d..a1668fd 100644 Binary files a/docs/articles/BacDive-ing-in_files/figure-html/ggplot-1.png and b/docs/articles/BacDive-ing-in_files/figure-html/ggplot-1.png differ diff --git a/docs/news/index.html b/docs/news/index.html index 74bac36..e59d032 100644 --- a/docs/news/index.html +++ b/docs/news/index.html @@ -122,6 +122,25 @@

Changelog

Source: NEWS.md +
+

+BacDiveR 0.5.0

+
+

+Added

+ +
+
+

+Changed

+ +
+

BacDiveR 0.4.2

@@ -136,9 +155,9 @@

BacDiveR 0.4.1

-
+

-Changed

+Changed

@@ -147,9 +166,9 @@

BacDiveR 0.4.0

-
+

-Added

+Added

-
+

-Changed

+Changed
-
+

-Added

+Added
  • Usable example / vignette in the README.md file (see #16)
@@ -192,6 +211,7 @@

Contents

    +
  • 0.5.0
  • 0.4.2
  • 0.4.1
  • 0.4.0
    • diff --git a/docs/reference/index.html b/docs/reference/index.html index afe47d9..fb94cb6 100644 --- a/docs/reference/index.html +++ b/docs/reference/index.html @@ -174,6 +174,12 @@

    repair_escaping()

    + +

    Repair Singly Escaped Space Characters

    + +

    retrieve_data()

    diff --git a/docs/reference/repair_escaping.html b/docs/reference/repair_escaping.html new file mode 100644 index 0000000..b2368b5 --- /dev/null +++ b/docs/reference/repair_escaping.html @@ -0,0 +1,185 @@ + + + + + + + + +Repair Singly Escaped Space Characters — repair_escaping • BacDiveR + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +
    + + + +
    + +
    +
    +
    +

    Repair Singly Escaped Space Characters

    + Source: R/util-repair_escaping.R + +
    + +
    + +

    Prevent "lexical error: invalid character inside string.", see +https://github.com/jeroen/jsonlite/issues/47 and +https://github.com/TIBHannover/BacDiveR/issues/43

    + +
    + + 
    repair_escaping(JSON, char)
    + +

    Arguments

    + + + + + + +
    JSON

    A character string containing JSON with invalidly, singly +escaped space characters

    + +

    Value

    + +

    A character string with JSON and correctly, doubly escaped +space characters

    + + +
    + +
    + +
    +
    +

    Developed by Katrin Leinweber.

    +
    + +
    +

    Site built with pkgdown.

    +
    + +
    +
    + + + + + + diff --git a/docs/reference/retrieve_search_results.html b/docs/reference/retrieve_search_results.html index d04412d..210a4e8 100644 --- a/docs/reference/retrieve_search_results.html +++ b/docs/reference/retrieve_search_results.html @@ -155,7 +155,7 @@

    Value

    Examples

    - 
      
    data_miller <- retrieve_search_results(queryURL = "https://bacdive.dsmz.de/advsearch?site=advsearch&searchparams[78][contenttype]=text&searchparams[78][typecontent]=contains&searchparams[78][searchterm]=Miller&advsearch=search")
    #> Data download in progress for BacDive-IDs: 
    #> 132598 
    #> 133012 
    #> 140488 
    
+    
      
    data_miller <- retrieve_search_results(queryURL = "https://bacdive.dsmz.de/advsearch?site=advsearch&searchparams[78][contenttype]=text&searchparams[78][typecontent]=contains&searchparams[78][searchterm]=Miller&advsearch=search")
    #> Data download in progress for BacDive-IDs: 
    #> 132598 
    #> 133012 
    #> 140488 
    #> Error in taxon_data %>% purrr::map(repair_escaping, char = "r") %>% purrr::map(repair_escaping,     "n") %>% purrr::map(repair_escaping, "t"): could not find function "%>%"