From 2aa61c155ebed3a8bb341627bd3ea57612937db1 Mon Sep 17 00:00:00 2001
From: avi <avi.vajpeyi@gmail.com>
Date: Tue, 19 Aug 2025 19:55:25 +1200
Subject: [PATCH 01/11] use COMPAS docker as base container

---
 .github/workflows/compas-compile-ci.yml | 59 ++++++++++++++++++-------
 1 file changed, 42 insertions(+), 17 deletions(-)

diff --git a/.github/workflows/compas-compile-ci.yml b/.github/workflows/compas-compile-ci.yml
index f10e7a9f1..e63bb162e 100644
--- a/.github/workflows/compas-compile-ci.yml
+++ b/.github/workflows/compas-compile-ci.yml
@@ -27,46 +27,68 @@ jobs:
 
     name: Build COMPAS
     runs-on: ubuntu-22.04
+    container:
+      image: teamcompas/compas:latest
+      options: --user root
 
     steps:
       - uses: actions/checkout@v4
-      - uses: actions/setup-python@v5
-        with:
-          python-version: '3.9'
-          cache: pip
-          cache-dependency-path: setup.py
-      # - name: Install TeXLive
-      #   uses: teatimeguest/setup-texlive-action@v3.3.4
-      - name: Install dependencies on ubuntu
+
+      - name: Verify container environment
         run: |
-          cd misc/cicd-scripts
-          chmod 755 linux-dependencies
-          ./linux-dependencies
-      - name: Build Compas
+          echo "Verifying COMPAS container dependencies..."
+          g++ --version
+          python3 --version
+          echo "Boost libraries:"
+          find /usr -name "*boost*" -type d 2>/dev/null | head -3 || echo "Boost may be in different location"
+          echo "LaTeX:"
+          pdflatex --version | head -2
+          echo "Container verification complete"
+
+      - name: Build COMPAS from source
         run: |
-          cd src && make -j $(nproc) -f Makefile
+          cd src
+          # Clean any existing builds to ensure fresh compilation
+          make clean 2>/dev/null || echo "No existing build to clean"
+          # Build with all available cores
+          make -j $(nproc) -f Makefile
+          # Verify the build worked
           ./COMPAS -v
-      - name: Install python utils
+          echo "COMPAS build successful!"
+
+      - name: Setup Python environment
         run: |
-          pip install --upgrade pip
+          # Update pip
+          python3 -m pip install --upgrade pip
+          # Install the package in development mode
           pip install -e .[dev]
+
       - name: Run example COMPAS job
         run: |
           export COMPAS_EXECUTABLE_PATH=${GITHUB_WORKSPACE}/src/COMPAS
           cd ${GITHUB_WORKSPACE}/py_tests/test_data/
           chmod 755 run.sh
+          echo "Contents of run.sh:"
           cat run.sh
+          echo "Running COMPAS example..."
           ./run.sh
-      - name: Run pytests
+
+      - name: Run pytest suite
         run: |
           cd ${GITHUB_WORKSPACE}
           export COMPAS_ROOT_DIR=${GITHUB_WORKSPACE}
+          echo "Available Jupyter kernels:"
           jupyter-kernelspec list
+          echo "Running non-web tests..."
           pytest --cov=compas_python_utils/ py_tests/ -m 'not webtest'
+          echo "Running web tests..."
           pytest --cov=compas_python_utils/ --cov-append py_tests/ -m webtest
+          echo "Test artifacts:"
           ls py_tests/test_artifacts
+          echo "Generating coverage reports..."
           coverage html
           coverage-badge -o coverage_badge.svg -f
+
       - name: Archive code coverage results
         uses: actions/upload-artifact@v4
         with:
@@ -74,6 +96,7 @@ jobs:
           path: |
             htmlcov/
             coverage_badge.svg
+
       - name: Archive COMPAS detailed-evolution plot
         id: upload
         uses: actions/upload-artifact@v4
@@ -81,10 +104,12 @@ jobs:
           name: ${{ env.ARTIFACT_NAME }}
           path: ${{ env.ARTIFACT_PATH }}/${{ env.ARTIFACT_NAME }}
           if-no-files-found: error
+
       - name: Test Summary
         run: |
           echo "### Test Results" >> $GITHUB_STEP_SUMMARY
-          echo "- Compas Build: Success" >> $GITHUB_STEP_SUMMARY
+          echo "- COMPAS Build: Success" >> $GITHUB_STEP_SUMMARY
           echo "- Python Utils Installation: Success" >> $GITHUB_STEP_SUMMARY
           echo "- Example COMPAS Job: Success" >> $GITHUB_STEP_SUMMARY
           echo "- Pytest Execution: Success" >> $GITHUB_STEP_SUMMARY
+          echo "- Using container: teamcompas/compas:latest" >> $GITHUB_STEP_SUMMARY
\ No newline at end of file

From 615faf9e6460d45429681e0faf21c377d6bd721f Mon Sep 17 00:00:00 2001
From: avi <avi.vajpeyi@gmail.com>
Date: Tue, 19 Aug 2025 20:00:23 +1200
Subject: [PATCH 02/11] use COMPAS docker to just build

---
 .github/workflows/compas-compile-ci.yml | 54 ++++++++++---------------
 1 file changed, 22 insertions(+), 32 deletions(-)

diff --git a/.github/workflows/compas-compile-ci.yml b/.github/workflows/compas-compile-ci.yml
index e63bb162e..ca747557d 100644
--- a/.github/workflows/compas-compile-ci.yml
+++ b/.github/workflows/compas-compile-ci.yml
@@ -27,46 +27,36 @@ jobs:
 
     name: Build COMPAS
     runs-on: ubuntu-22.04
-    container:
-      image: teamcompas/compas:latest
-      options: --user root
 
     steps:
       - uses: actions/checkout@v4
 
-      - name: Verify container environment
-        run: |
-          echo "Verifying COMPAS container dependencies..."
-          g++ --version
-          python3 --version
-          echo "Boost libraries:"
-          find /usr -name "*boost*" -type d 2>/dev/null | head -3 || echo "Boost may be in different location"
-          echo "LaTeX:"
-          pdflatex --version | head -2
-          echo "Container verification complete"
+      - uses: actions/setup-python@v5
+        with:
+          python-version: '3.9'
+          cache: pip
+          cache-dependency-path: setup.py
 
-      - name: Build COMPAS from source
+      - name: Build COMPAS using Docker container
         run: |
-          cd src
-          # Clean any existing builds to ensure fresh compilation
-          make clean 2>/dev/null || echo "No existing build to clean"
-          # Build with all available cores
-          make -j $(nproc) -f Makefile
-          # Verify the build worked
-          ./COMPAS -v
-          echo "COMPAS build successful!"
+          echo "Building COMPAS using teamcompas/compas:latest container..."
+          docker run --rm \
+            -v ${{ github.workspace }}:/workspace \
+            -w /workspace \
+            teamcompas/compas:latest \
+            sh -c "cd src && make clean 2>/dev/null || echo 'No existing build to clean' && make -j \$(nproc) -f Makefile && ./COMPAS -v"
+          
+          echo "COMPAS build completed successfully!"
 
-      - name: Setup Python environment
+      - name: Install python utils
         run: |
-          # Update pip
-          python3 -m pip install --upgrade pip
-          # Install the package in development mode
+          pip install --upgrade pip
           pip install -e .[dev]
 
       - name: Run example COMPAS job
         run: |
-          export COMPAS_EXECUTABLE_PATH=${GITHUB_WORKSPACE}/src/COMPAS
-          cd ${GITHUB_WORKSPACE}/py_tests/test_data/
+          export COMPAS_EXECUTABLE_PATH=${{ github.workspace }}/src/COMPAS
+          cd ${{ github.workspace }}/py_tests/test_data/
           chmod 755 run.sh
           echo "Contents of run.sh:"
           cat run.sh
@@ -75,8 +65,8 @@ jobs:
 
       - name: Run pytest suite
         run: |
-          cd ${GITHUB_WORKSPACE}
-          export COMPAS_ROOT_DIR=${GITHUB_WORKSPACE}
+          cd ${{ github.workspace }}
+          export COMPAS_ROOT_DIR=${{ github.workspace }}
           echo "Available Jupyter kernels:"
           jupyter-kernelspec list
           echo "Running non-web tests..."
@@ -108,8 +98,8 @@ jobs:
       - name: Test Summary
         run: |
           echo "### Test Results" >> $GITHUB_STEP_SUMMARY
-          echo "- COMPAS Build: Success" >> $GITHUB_STEP_SUMMARY
+          echo "- COMPAS Build: Success (using Docker)" >> $GITHUB_STEP_SUMMARY
           echo "- Python Utils Installation: Success" >> $GITHUB_STEP_SUMMARY
           echo "- Example COMPAS Job: Success" >> $GITHUB_STEP_SUMMARY
           echo "- Pytest Execution: Success" >> $GITHUB_STEP_SUMMARY
-          echo "- Using container: teamcompas/compas:latest" >> $GITHUB_STEP_SUMMARY
\ No newline at end of file
+          echo "- Container used: teamcompas/compas:latest" >> $GITHUB_STEP_SUMMARY
\ No newline at end of file

From 4406a5f92aef3d4fcf62a4b808be5d6772e03bc7 Mon Sep 17 00:00:00 2001
From: avi <avi.vajpeyi@gmail.com>
Date: Tue, 19 Aug 2025 20:17:39 +1200
Subject: [PATCH 03/11] use COMPAS docker for building, running and pytest

---
 .github/workflows/compas-compile-ci.yml | 99 +++++++++++++------------
 1 file changed, 53 insertions(+), 46 deletions(-)

diff --git a/.github/workflows/compas-compile-ci.yml b/.github/workflows/compas-compile-ci.yml
index ca747557d..502245083 100644
--- a/.github/workflows/compas-compile-ci.yml
+++ b/.github/workflows/compas-compile-ci.yml
@@ -31,53 +31,60 @@ jobs:
     steps:
       - uses: actions/checkout@v4
 
-      - uses: actions/setup-python@v5
-        with:
-          python-version: '3.9'
-          cache: pip
-          cache-dependency-path: setup.py
-
-      - name: Build COMPAS using Docker container
+      - name: Build and test COMPAS entirely in container
         run: |
-          echo "Building COMPAS using teamcompas/compas:latest container..."
+          echo "Running complete COMPAS build and test suite in container..."
           docker run --rm \
             -v ${{ github.workspace }}:/workspace \
             -w /workspace \
             teamcompas/compas:latest \
-            sh -c "cd src && make clean 2>/dev/null || echo 'No existing build to clean' && make -j \$(nproc) -f Makefile && ./COMPAS -v"
-          
-          echo "COMPAS build completed successfully!"
-
-      - name: Install python utils
-        run: |
-          pip install --upgrade pip
-          pip install -e .[dev]
-
-      - name: Run example COMPAS job
-        run: |
-          export COMPAS_EXECUTABLE_PATH=${{ github.workspace }}/src/COMPAS
-          cd ${{ github.workspace }}/py_tests/test_data/
-          chmod 755 run.sh
-          echo "Contents of run.sh:"
-          cat run.sh
-          echo "Running COMPAS example..."
-          ./run.sh
-
-      - name: Run pytest suite
-        run: |
-          cd ${{ github.workspace }}
-          export COMPAS_ROOT_DIR=${{ github.workspace }}
-          echo "Available Jupyter kernels:"
-          jupyter-kernelspec list
-          echo "Running non-web tests..."
-          pytest --cov=compas_python_utils/ py_tests/ -m 'not webtest'
-          echo "Running web tests..."
-          pytest --cov=compas_python_utils/ --cov-append py_tests/ -m webtest
-          echo "Test artifacts:"
-          ls py_tests/test_artifacts
-          echo "Generating coverage reports..."
-          coverage html
-          coverage-badge -o coverage_badge.svg -f
+            sh -c "
+              set -e  # Exit on any error
+              
+              echo '=== Building COMPAS ==='
+              cd src
+              make clean 2>/dev/null || echo 'No existing build to clean'
+              make -j \$(nproc) -f Makefile
+              ./COMPAS -v
+              echo 'COMPAS build successful!'
+              
+              echo '=== Installing Python dependencies ==='
+              cd /workspace
+              python3 -m pip install --upgrade pip
+              pip install -e .[dev]
+              echo 'Python dependencies installed!'
+              
+              echo '=== Running example COMPAS job ==='
+              export COMPAS_EXECUTABLE_PATH=/workspace/src/COMPAS
+              cd /workspace/py_tests/test_data/
+              chmod 755 run.sh
+              echo 'Contents of run.sh:'
+              cat run.sh
+              echo 'Running COMPAS example...'
+              ./run.sh
+              echo 'Example job completed!'
+              
+              echo '=== Running pytest suite ==='
+              cd /workspace
+              export COMPAS_ROOT_DIR=/workspace
+              echo 'Available Jupyter kernels:'
+              jupyter-kernelspec list || echo 'Jupyter not available, continuing...'
+              
+              echo 'Running non-web tests...'
+              pytest --cov=compas_python_utils/ py_tests/ -m 'not webtest'
+              
+              echo 'Running web tests...'
+              pytest --cov=compas_python_utils/ --cov-append py_tests/ -m webtest
+              
+              echo 'Test artifacts:'
+              ls py_tests/test_artifacts || echo 'No test artifacts directory'
+              
+              echo 'Generating coverage reports...'
+              coverage html
+              coverage-badge -o coverage_badge.svg -f
+              
+              echo 'All tests completed successfully!'
+            "
 
       - name: Archive code coverage results
         uses: actions/upload-artifact@v4
@@ -98,8 +105,8 @@ jobs:
       - name: Test Summary
         run: |
           echo "### Test Results" >> $GITHUB_STEP_SUMMARY
-          echo "- COMPAS Build: Success (using Docker)" >> $GITHUB_STEP_SUMMARY
-          echo "- Python Utils Installation: Success" >> $GITHUB_STEP_SUMMARY
-          echo "- Example COMPAS Job: Success" >> $GITHUB_STEP_SUMMARY
-          echo "- Pytest Execution: Success" >> $GITHUB_STEP_SUMMARY
+          echo "- COMPAS Build: Success (Docker container)" >> $GITHUB_STEP_SUMMARY
+          echo "- Python Utils Installation: Success (Docker container)" >> $GITHUB_STEP_SUMMARY
+          echo "- Example COMPAS Job: Success (Docker container)" >> $GITHUB_STEP_SUMMARY
+          echo "- Pytest Execution: Success (Docker container)" >> $GITHUB_STEP_SUMMARY
           echo "- Container used: teamcompas/compas:latest" >> $GITHUB_STEP_SUMMARY
\ No newline at end of file

From 214382c9eace216f84a3ef7b0d56fa273e662133 Mon Sep 17 00:00:00 2001
From: avi <avi.vajpeyi@gmail.com>
Date: Wed, 20 Aug 2025 16:12:11 +1200
Subject: [PATCH 04/11] use updated docker imagae

---
 .github/workflows/compas-compile-ci.yml | 119 ++++++++++++------------
 1 file changed, 59 insertions(+), 60 deletions(-)

diff --git a/.github/workflows/compas-compile-ci.yml b/.github/workflows/compas-compile-ci.yml
index 502245083..771c8ff53 100644
--- a/.github/workflows/compas-compile-ci.yml
+++ b/.github/workflows/compas-compile-ci.yml
@@ -27,64 +27,62 @@ jobs:
 
     name: Build COMPAS
     runs-on: ubuntu-22.04
+    # Use Docker Hub for now (GHCR is private)
+    container: teamcompas/compas:latest
+    # TODO: Switch to GHCR when package is made public
+    # container: ghcr.io/teamcompas/compas:latest
 
     steps:
-      - uses: actions/checkout@v4
+      - name: Checkout repository
+        uses: actions/checkout@v4
 
-      - name: Build and test COMPAS entirely in container
+      - name: Build COMPAS from source
         run: |
-          echo "Running complete COMPAS build and test suite in container..."
-          docker run --rm \
-            -v ${{ github.workspace }}:/workspace \
-            -w /workspace \
-            teamcompas/compas:latest \
-            sh -c "
-              set -e  # Exit on any error
-              
-              echo '=== Building COMPAS ==='
-              cd src
-              make clean 2>/dev/null || echo 'No existing build to clean'
-              make -j \$(nproc) -f Makefile
-              ./COMPAS -v
-              echo 'COMPAS build successful!'
-              
-              echo '=== Installing Python dependencies ==='
-              cd /workspace
-              python3 -m pip install --upgrade pip
-              pip install -e .[dev]
-              echo 'Python dependencies installed!'
-              
-              echo '=== Running example COMPAS job ==='
-              export COMPAS_EXECUTABLE_PATH=/workspace/src/COMPAS
-              cd /workspace/py_tests/test_data/
-              chmod 755 run.sh
-              echo 'Contents of run.sh:'
-              cat run.sh
-              echo 'Running COMPAS example...'
-              ./run.sh
-              echo 'Example job completed!'
-              
-              echo '=== Running pytest suite ==='
-              cd /workspace
-              export COMPAS_ROOT_DIR=/workspace
-              echo 'Available Jupyter kernels:'
-              jupyter-kernelspec list || echo 'Jupyter not available, continuing...'
-              
-              echo 'Running non-web tests...'
-              pytest --cov=compas_python_utils/ py_tests/ -m 'not webtest'
-              
-              echo 'Running web tests...'
-              pytest --cov=compas_python_utils/ --cov-append py_tests/ -m webtest
-              
-              echo 'Test artifacts:'
-              ls py_tests/test_artifacts || echo 'No test artifacts directory'
-              
-              echo 'Generating coverage reports...'
-              coverage html
-              coverage-badge -o coverage_badge.svg -f
-              
-              echo 'All tests completed successfully!'
-            "
+          echo "Building COMPAS from source..."
+          cd src
+          make clean 2>/dev/null || echo 'No existing build to clean'
+          make -j $(nproc) -f Makefile
+          ./COMPAS -v
+          echo "COMPAS build completed successfully!"
+
+      - name: Install Python dependencies
+        run: |
+          echo "Installing Python dependencies..."
+          python3 -m pip install --upgrade pip
+          pip install -e .[dev]
+          echo "Python dependencies installed!"
+
+      - name: Run example COMPAS job
+        run: |
+          echo "Running example COMPAS job..."
+          export COMPAS_EXECUTABLE_PATH=${GITHUB_WORKSPACE}/src/COMPAS
+          cd ${GITHUB_WORKSPACE}/py_tests/test_data/
+          chmod 755 run.sh
+          echo "Contents of run.sh:"
+          cat run.sh
+          ./run.sh
+          echo "Example job completed!"
+
+      - name: Run pytest suite
+        run: |
+          echo "Running pytest suite..."
+          cd ${GITHUB_WORKSPACE}
+          export COMPAS_ROOT_DIR=${GITHUB_WORKSPACE}
+          
+          if command -v jupyter-kernelspec &> /dev/null; then
+            echo "Available Jupyter kernels:"
+            jupyter-kernelspec list
+          fi
+          
+          pytest --cov=compas_python_utils/ py_tests/ -m 'not webtest'
+          pytest --cov=compas_python_utils/ --cov-append py_tests/ -m webtest
+          
+          echo "Test artifacts:"
+          ls py_tests/test_artifacts/ 2>/dev/null || echo "No test artifacts found"
+          
+          coverage html
+          coverage-badge -o coverage_badge.svg -f
+          echo "All tests completed successfully!"
 
       - name: Archive code coverage results
         uses: actions/upload-artifact@v4
@@ -104,9 +102,10 @@ jobs:
 
       - name: Test Summary
         run: |
-          echo "### Test Results" >> $GITHUB_STEP_SUMMARY
-          echo "- COMPAS Build: Success (Docker container)" >> $GITHUB_STEP_SUMMARY
-          echo "- Python Utils Installation: Success (Docker container)" >> $GITHUB_STEP_SUMMARY
-          echo "- Example COMPAS Job: Success (Docker container)" >> $GITHUB_STEP_SUMMARY
-          echo "- Pytest Execution: Success (Docker container)" >> $GITHUB_STEP_SUMMARY
-          echo "- Container used: teamcompas/compas:latest" >> $GITHUB_STEP_SUMMARY
\ No newline at end of file
+          echo "### COMPAS CI Results" >> $GITHUB_STEP_SUMMARY
+          echo "- COMPAS Build: Success" >> $GITHUB_STEP_SUMMARY
+          echo "- Python Dependencies: Success" >> $GITHUB_STEP_SUMMARY
+          echo "- Example COMPAS Job: Success" >> $GITHUB_STEP_SUMMARY
+          echo "- Pytest Suite: Success" >> $GITHUB_STEP_SUMMARY
+          echo "- Container: teamcompas/compas:latest (Docker Hub)" >> $GITHUB_STEP_SUMMARY
+          echo "- Ready to switch to: ghcr.io/teamcompas/compas:latest" >> $GITHUB_STEP_SUMMARY
\ No newline at end of file

From c798ac57dd16e5b9c0978b837c07d6a20b927337 Mon Sep 17 00:00:00 2001
From: avi <avi.vajpeyi@gmail.com>
Date: Wed, 20 Aug 2025 16:21:52 +1200
Subject: [PATCH 05/11] Add detailed evol plot

---
 .github/workflows/compas-compile-ci.yml | 46 +++++++++++++++++++++++++
 1 file changed, 46 insertions(+)

diff --git a/.github/workflows/compas-compile-ci.yml b/.github/workflows/compas-compile-ci.yml
index 771c8ff53..5311d34a0 100644
--- a/.github/workflows/compas-compile-ci.yml
+++ b/.github/workflows/compas-compile-ci.yml
@@ -100,6 +100,52 @@ jobs:
           path: ${{ env.ARTIFACT_PATH }}/${{ env.ARTIFACT_NAME }}
           if-no-files-found: error
 
+      - name: Comment on PR with results
+        if: github.event_name == 'pull_request'
+        uses: actions/github-script@v7
+        with:
+          github-token: ${{ secrets.GITHUB_TOKEN }}
+          script: |
+            const fs = require('fs');
+            const evolutionPlotPath = '${{ env.ARTIFACT_PATH }}/${{ env.ARTIFACT_NAME }}';
+            const shortSha = context.sha.substring(0, 7);
+            const workflowUrl = `${context.serverUrl}/${context.repo.owner}/${context.repo.repo}/actions/runs/${context.runId}`;
+            
+            let plotSection = '';
+            try {
+              if (fs.existsSync(evolutionPlotPath)) {
+                const imageData = fs.readFileSync(evolutionPlotPath, {encoding: 'base64'});
+                plotSection = `
+            ### 📊 Detailed Evolution Plot
+            <details><summary>Click to view evolution plot</summary>
+            
+            ![Evolution Plot](data:image/png;base64,${imageData})
+            </details>`;
+              } else {
+                plotSection = '\n### ⚠️ Evolution plot not found';
+              }
+            } catch (error) {
+              plotSection = `\n### ⚠️ Evolution plot error: ${error.message}`;
+            }
+
+            await github.rest.issues.createComment({
+              issue_number: context.issue.number,
+              owner: context.repo.owner,
+              repo: context.repo.repo,
+              body: `![badge](https://img.shields.io/badge/Build_Success-28a745?style=for-the-badge&logo=github-actions&logoColor=white)
+
+            ## ✅ COMPAS Build Successful!
+
+            | Item | Value |
+            |------|-------|
+            | **Commit** | [\`${shortSha}\`](${context.serverUrl}/${context.repo.owner}/${context.repo.repo}/commit/${context.sha}) |
+            | **Logs** | [View workflow](${workflowUrl}) |
+            ${plotSection}
+            
+            ---
+            <sub>Generated by COMPAS CI</sub>`
+            });
+
       - name: Test Summary
         run: |
           echo "### COMPAS CI Results" >> $GITHUB_STEP_SUMMARY

From c95c3c94a68ad6aaf1fa85137909647d5e062e7f Mon Sep 17 00:00:00 2001
From: avi <avi.vajpeyi@gmail.com>
Date: Wed, 20 Aug 2025 16:34:52 +1200
Subject: [PATCH 06/11] fix: float_ deprecated in numpy>2.0

---
 .../binned_cosmic_integrator/io.py            | 27 ++++++++++---------
 1 file changed, 14 insertions(+), 13 deletions(-)

diff --git a/compas_python_utils/cosmic_integration/binned_cosmic_integrator/io.py b/compas_python_utils/cosmic_integration/binned_cosmic_integrator/io.py
index 135d7239a..32115f59a 100644
--- a/compas_python_utils/cosmic_integration/binned_cosmic_integrator/io.py
+++ b/compas_python_utils/cosmic_integration/binned_cosmic_integrator/io.py
@@ -25,14 +25,14 @@ def recursively_save_dict_contents_to_group(h5file: h5py.File, group: str, dic:
 
 
 def encode_for_hdf5(key, item):
-    if isinstance(item, np.int_):
-        item = int(item)
-    elif isinstance(item, np.float_):
-        item = float(item)
-    elif isinstance(item, np.complex_):
-        item = complex(item)
+    if isinstance(item, (np.generic, int, float, complex)):
+        if isinstance(item, np.integer):
+            item = int(item)
+        elif isinstance(item, np.floating):
+            item = float(item)
+        elif isinstance(item, np.complexfloating):
+            item = complex(item)
     if isinstance(item, np.ndarray):
-        # Numpy's wide unicode strings are not supported by hdf5
         if item.dtype.kind == 'U':
             item = np.array(item, dtype='S')
     if isinstance(item, (np.ndarray, int, float, complex, str, bytes)):
@@ -43,7 +43,7 @@ def encode_for_hdf5(key, item):
         if len(item) == 0:
             output = item
         elif isinstance(item[0], (str, bytes)) or item[0] is None:
-            output = list()
+            output = []
             for value in item:
                 if isinstance(value, str):
                     output.append(value.encode("utf-8"))
@@ -68,16 +68,17 @@ def decode_from_hdf5(item):
     elif isinstance(item, bytes) and item == b"__none__":
         output = None
     elif isinstance(item, (bytes, bytearray)):
-        output = item.decode()
+        output = item.decode("utf-8")
     elif isinstance(item, np.ndarray):
         if item.size == 0:
             output = item
-        elif "|S" in str(item.dtype) or isinstance(item[0], bytes):
-            output = [it.decode() for it in item]
+        elif "|S" in str(item.dtype) or (item.dtype.kind == 'S') or \
+                (item.size > 0 and isinstance(item.flat[0], bytes)):
+            output = [it.decode("utf-8") for it in item]
         else:
             output = item
-    elif isinstance(item, np.bool_):
+    elif isinstance(item, (np.bool_, bool)):
         output = bool(item)
     else:
         output = item
-    return output
+    return output
\ No newline at end of file

From 5080b3b058a52ba62c4edd4e10a8717a280ebaad Mon Sep 17 00:00:00 2001
From: avi <avi.vajpeyi@gmail.com>
Date: Wed, 20 Aug 2025 16:57:19 +1200
Subject: [PATCH 07/11] upload image

---
 .github/workflows/compas-compile-ci.yml | 39 ++++++++++++++++++++-----
 1 file changed, 31 insertions(+), 8 deletions(-)

diff --git a/.github/workflows/compas-compile-ci.yml b/.github/workflows/compas-compile-ci.yml
index 5311d34a0..1692a0c4e 100644
--- a/.github/workflows/compas-compile-ci.yml
+++ b/.github/workflows/compas-compile-ci.yml
@@ -27,7 +27,6 @@ jobs:
 
     name: Build COMPAS
     runs-on: ubuntu-22.04
-    # Use Docker Hub for now (GHCR is private)
     container: teamcompas/compas:latest
     # TODO: Switch to GHCR when package is made public
     # container: ghcr.io/teamcompas/compas:latest
@@ -112,14 +111,40 @@ jobs:
             const workflowUrl = `${context.serverUrl}/${context.repo.owner}/${context.repo.repo}/actions/runs/${context.runId}`;
             
             let plotSection = '';
+            
             try {
               if (fs.existsSync(evolutionPlotPath)) {
-                const imageData = fs.readFileSync(evolutionPlotPath, {encoding: 'base64'});
+                const tag = `pr-${context.issue.number}-${Date.now()}`;
+                const plotData = fs.readFileSync(evolutionPlotPath);
+                
+                const release = await github.rest.repos.createRelease({
+                  owner: context.repo.owner,
+                  repo: context.repo.repo,
+                  tag_name: tag,
+                  name: `Evolution Plot for PR #${context.issue.number}`,
+                  body: `Temporary release to host evolution plot for PR #${context.issue.number}`,
+                  draft: false,
+                  prerelease: true
+                });
+                
+                const asset = await github.rest.repos.uploadReleaseAsset({
+                  owner: context.repo.owner,
+                  repo: context.repo.repo,
+                  release_id: release.data.id,
+                  name: 'detailedEvolutionPlot.png',
+                  data: plotData,
+                  headers: {
+                    'content-type': 'image/png'
+                  }
+                });
+                
+                const imageUrl = asset.data.browser_download_url;
+                
                 plotSection = `
-            ### 📊 Detailed Evolution Plot
+            ###  Detailed Evolution Plot
             <details><summary>Click to view evolution plot</summary>
             
-            ![Evolution Plot](data:image/png;base64,${imageData})
+            ![Evolution Plot](${imageUrl})
             </details>`;
               } else {
                 plotSection = '\n### ⚠️ Evolution plot not found';
@@ -127,7 +152,7 @@ jobs:
             } catch (error) {
               plotSection = `\n### ⚠️ Evolution plot error: ${error.message}`;
             }
-
+            
             await github.rest.issues.createComment({
               issue_number: context.issue.number,
               owner: context.repo.owner,
@@ -152,6 +177,4 @@ jobs:
           echo "- COMPAS Build: Success" >> $GITHUB_STEP_SUMMARY
           echo "- Python Dependencies: Success" >> $GITHUB_STEP_SUMMARY
           echo "- Example COMPAS Job: Success" >> $GITHUB_STEP_SUMMARY
-          echo "- Pytest Suite: Success" >> $GITHUB_STEP_SUMMARY
-          echo "- Container: teamcompas/compas:latest (Docker Hub)" >> $GITHUB_STEP_SUMMARY
-          echo "- Ready to switch to: ghcr.io/teamcompas/compas:latest" >> $GITHUB_STEP_SUMMARY
\ No newline at end of file
+          echo "- Pytest Suite: Success" >> $GITHUB_STEP_SUMMARY
\ No newline at end of file

From a62c637ce60429e020ddf5be9f0977b9fdf5c3ed Mon Sep 17 00:00:00 2001
From: avi <avi.vajpeyi@gmail.com>
Date: Thu, 11 Sep 2025 12:14:00 +1200
Subject: [PATCH 08/11] fix image paths

---
 .github/workflows/compas-compile-ci.yml       | 121 ++++-----
 .../workflows/pr_artifact_url_commenter.yml   | 254 ------------------
 2 files changed, 47 insertions(+), 328 deletions(-)
 delete mode 100644 .github/workflows/pr_artifact_url_commenter.yml

diff --git a/.github/workflows/compas-compile-ci.yml b/.github/workflows/compas-compile-ci.yml
index 1692a0c4e..56130fd8f 100644
--- a/.github/workflows/compas-compile-ci.yml
+++ b/.github/workflows/compas-compile-ci.yml
@@ -95,86 +95,59 @@ jobs:
         id: upload
         uses: actions/upload-artifact@v4
         with:
-          name: ${{ env.ARTIFACT_NAME }}
+          name: evolution-plot-${{ github.run_number }}
           path: ${{ env.ARTIFACT_PATH }}/${{ env.ARTIFACT_NAME }}
           if-no-files-found: error
 
-      - name: Comment on PR with results
-        if: github.event_name == 'pull_request'
-        uses: actions/github-script@v7
-        with:
-          github-token: ${{ secrets.GITHUB_TOKEN }}
-          script: |
-            const fs = require('fs');
-            const evolutionPlotPath = '${{ env.ARTIFACT_PATH }}/${{ env.ARTIFACT_NAME }}';
-            const shortSha = context.sha.substring(0, 7);
-            const workflowUrl = `${context.serverUrl}/${context.repo.owner}/${context.repo.repo}/actions/runs/${context.runId}`;
-            
-            let plotSection = '';
-            
-            try {
-              if (fs.existsSync(evolutionPlotPath)) {
-                const tag = `pr-${context.issue.number}-${Date.now()}`;
-                const plotData = fs.readFileSync(evolutionPlotPath);
-                
-                const release = await github.rest.repos.createRelease({
-                  owner: context.repo.owner,
-                  repo: context.repo.repo,
-                  tag_name: tag,
-                  name: `Evolution Plot for PR #${context.issue.number}`,
-                  body: `Temporary release to host evolution plot for PR #${context.issue.number}`,
-                  draft: false,
-                  prerelease: true
-                });
-                
-                const asset = await github.rest.repos.uploadReleaseAsset({
-                  owner: context.repo.owner,
-                  repo: context.repo.repo,
-                  release_id: release.data.id,
-                  name: 'detailedEvolutionPlot.png',
-                  data: plotData,
-                  headers: {
-                    'content-type': 'image/png'
-                  }
-                });
-                
-                const imageUrl = asset.data.browser_download_url;
-                
-                plotSection = `
-            ###  Detailed Evolution Plot
-            <details><summary>Click to view evolution plot</summary>
-            
-            ![Evolution Plot](${imageUrl})
-            </details>`;
-              } else {
-                plotSection = '\n### ⚠️ Evolution plot not found';
-              }
-            } catch (error) {
-              plotSection = `\n### ⚠️ Evolution plot error: ${error.message}`;
-            }
-            
-            await github.rest.issues.createComment({
-              issue_number: context.issue.number,
-              owner: context.repo.owner,
-              repo: context.repo.repo,
-              body: `![badge](https://img.shields.io/badge/Build_Success-28a745?style=for-the-badge&logo=github-actions&logoColor=white)
-
-            ## ✅ COMPAS Build Successful!
-
-            | Item | Value |
-            |------|-------|
-            | **Commit** | [\`${shortSha}\`](${context.serverUrl}/${context.repo.owner}/${context.repo.repo}/commit/${context.sha}) |
-            | **Logs** | [View workflow](${workflowUrl}) |
-            ${plotSection}
-            
-            ---
-            <sub>Generated by COMPAS CI</sub>`
-            });
-
       - name: Test Summary
         run: |
           echo "### COMPAS CI Results" >> $GITHUB_STEP_SUMMARY
           echo "- COMPAS Build: Success" >> $GITHUB_STEP_SUMMARY
           echo "- Python Dependencies: Success" >> $GITHUB_STEP_SUMMARY
           echo "- Example COMPAS Job: Success" >> $GITHUB_STEP_SUMMARY
-          echo "- Pytest Suite: Success" >> $GITHUB_STEP_SUMMARY
\ No newline at end of file
+          echo "- Pytest Suite: Success" >> $GITHUB_STEP_SUMMARY
+
+  comment-with-plot:
+    name: Comment PR with Evolution Plot
+    runs-on: ubuntu-22.04
+    container: docker://ghcr.io/iterative/cml:0-dvc2-base1
+    needs: compas
+    if: github.event_name == 'pull_request'
+
+    env:
+      ARTIFACT_NAME: detailedEvolutionPlot.png
+
+    steps:
+      - name: Download evolution plot
+        uses: actions/download-artifact@v4
+        with:
+          name: evolution-plot-${{ github.run_number }}
+
+      - name: Create report with evolution plot
+        env:
+          REPO_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+        run: |
+          echo "## ✅ COMPAS Build Successful!" >> report.md
+          echo "" >> report.md
+          echo "| Item | Value |" >> report.md
+          echo "|------|-------|" >> report.md
+          echo "| **Commit** | [\`${GITHUB_SHA:0:7}\`](${GITHUB_SERVER_URL}/${GITHUB_REPOSITORY}/commit/${GITHUB_SHA}) |" >> report.md
+          echo "| **Logs** | [View workflow](${GITHUB_SERVER_URL}/${GITHUB_REPOSITORY}/actions/runs/${GITHUB_RUN_ID}) |" >> report.md
+          echo "" >> report.md
+          
+          if [ -f "${{ env.ARTIFACT_NAME }}" ]; then
+            echo "### 📊 Detailed Evolution Plot" >> report.md
+            echo "<details><summary>Click to view evolution plot</summary>" >> report.md
+            echo "" >> report.md
+            echo "![](./${{ env.ARTIFACT_NAME }})" >> report.md
+            echo "</details>" >> report.md
+          else
+            echo "### ⚠️ Evolution plot not found" >> report.md
+          fi
+          
+          echo "" >> report.md
+          echo "---" >> report.md
+          echo "<sub>Generated by COMPAS CI with CML</sub>" >> report.md
+          
+          # Post the report using CML
+          cml comment create report.md
\ No newline at end of file
diff --git a/.github/workflows/pr_artifact_url_commenter.yml b/.github/workflows/pr_artifact_url_commenter.yml
deleted file mode 100644
index 90a3604d3..000000000
--- a/.github/workflows/pr_artifact_url_commenter.yml
+++ /dev/null
@@ -1,254 +0,0 @@
-name: Comment on Pull request
-
-on:
-  workflow_run:
-    workflows: ['COMPAS compile test']
-    types:
-      - completed
-
-jobs:
-  comment:
-    runs-on: ubuntu-latest
-    if: ${{ github.event.workflow_run.conclusion == 'success' }}
-    steps:
-      - name: Get Artifact and Pull request info
-        env:
-          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-          WORKFLOW_RUN_EVENT_OBJ: ${{ toJSON(github.event.workflow_run) }}
-          OWNER: ${{ github.repository_owner }}
-          REPO: ${{ github.event.repository.name }}
-        run: |
-          # Extract workflow run info
-          PREVIOUS_JOB_ID=$(jq -r '.id' <<< "$WORKFLOW_RUN_EVENT_OBJ")
-          echo "PREVIOUS_JOB_ID=$PREVIOUS_JOB_ID" >> "$GITHUB_ENV"
-          
-          HEAD_SHA="${{ github.event.workflow_run.head_sha }}"
-          echo "HEAD_SHA=$HEAD_SHA" >> "$GITHUB_ENV"
-          
-          # Get PR number from the workflow run
-          echo "Looking for PR associated with commit $HEAD_SHA..."
-          PR_NUMBER=$(gh api "/repos/$OWNER/$REPO/commits/$HEAD_SHA/pulls" \
-            --jq '.[0].number // empty' 2>/dev/null || echo "")
-          
-          if [[ -n "$PR_NUMBER" && "$PR_NUMBER" != "null" ]]; then
-            echo "Found PR #$PR_NUMBER"
-            echo "PR_NUMBER=$PR_NUMBER" >> "$GITHUB_ENV"
-            
-            # Look for the specific artifact
-            ARTIFACT_NAME="detailedEvolutionPlot.png"
-            echo "Searching for artifact: $ARTIFACT_NAME from workflow run $PREVIOUS_JOB_ID..."
-            
-            # Retry loop with better error handling
-            ARTIFACT_ID=""
-            for i in {1..8}; do
-              echo "Attempt $i/8: Looking for artifact..."
-              
-              # Use more robust jq filter
-              ARTIFACT_ID=$(gh api "/repos/$OWNER/$REPO/actions/artifacts" \
-                --jq --arg workflow_id "$PREVIOUS_JOB_ID" --arg name "$ARTIFACT_NAME" \
-                '.artifacts[] | select(.workflow_run.id == ($workflow_id | tonumber) and .expired == false and .name == $name) | .id' \
-                2>/dev/null | head -n1 || echo "")
-              
-              if [[ -n "$ARTIFACT_ID" ]]; then 
-                echo "Found artifact with ID: $ARTIFACT_ID"
-                break
-              fi
-              
-              echo "Artifact not available yet, waiting 12s before retry..."
-              sleep 12
-            done
-            
-            if [[ -z "$ARTIFACT_ID" ]]; then
-              echo "Warning: Could not find artifact '$ARTIFACT_NAME' after 8 attempts"
-              echo "This might be expected if the artifact generation failed or is still processing."
-            fi
-            
-            echo "ARTIFACT_ID=${ARTIFACT_ID:-}" >> "$GITHUB_ENV"
-          else
-            echo "No PR found for this workflow run (this is normal for direct pushes to main/dev)"
-            echo "PR_NUMBER=" >> "$GITHUB_ENV"
-            echo "ARTIFACT_ID=" >> "$GITHUB_ENV"
-          fi
-
-      - name: Download artifact
-        if: env.PR_NUMBER != '' && env.ARTIFACT_ID != ''
-        run: |
-          echo "Downloading artifact ${{ env.ARTIFACT_ID }}..."
-          
-          # Download with better error handling
-          if gh api "/repos/${{ github.repository }}/actions/artifacts/${{ env.ARTIFACT_ID }}/zip" --output artifact.zip; then
-            echo "Successfully downloaded artifact.zip"
-            
-            # Extract and verify
-            if unzip -q artifact.zip; then
-              rm artifact.zip
-              
-              if [[ -f "detailedEvolutionPlot.png" ]]; then
-                echo "Found detailedEvolutionPlot.png"
-                echo "File size: $(du -h detailedEvolutionPlot.png | cut -f1)"
-                # Verify it's actually a PNG file
-                if file detailedEvolutionPlot.png | grep -q "PNG image"; then
-                  echo "Verified as valid PNG image"
-                else
-                  echo "Warning: File may not be a valid PNG"
-                fi
-              else
-                echo "Error: detailedEvolutionPlot.png not found in extracted files"
-                echo "Available files:"
-                ls -la
-                exit 1
-              fi
-            else
-              echo "Error: Failed to extract artifact.zip"
-              exit 1
-            fi
-          else
-            echo "Error: Failed to download artifact"
-            exit 1
-          fi
-
-      - name: Create success comment with artifact
-        if: env.PR_NUMBER != '' && env.ARTIFACT_ID != ''
-        env:
-          JOB_PATH: "${{ github.server_url }}/${{ github.repository }}/actions/runs/${{ env.PREVIOUS_JOB_ID }}"
-          ARTIFACT_DL: "${{ github.server_url }}/${{ github.repository }}/suites/${{ github.event.workflow_run.check_suite_id }}/artifacts/${{ env.ARTIFACT_ID }}"
-        uses: actions/github-script@v7
-        with:
-          github-token: ${{secrets.GITHUB_TOKEN}}
-          script: |
-            const fs = require('fs');
-            
-            try {
-              // Read and validate the image
-              if (!fs.existsSync('detailedEvolutionPlot.png')) {
-                throw new Error('detailedEvolutionPlot.png file not found');
-              }
-              
-              const stats = fs.statSync('detailedEvolutionPlot.png');
-              console.log(`Image file size: ${(stats.size / 1024).toFixed(1)} KB`);
-              
-              if (stats.size === 0) {
-                throw new Error('detailedEvolutionPlot.png is empty');
-              }
-              
-              // GitHub has a ~65KB limit for image embeds, warn if approaching
-              if (stats.size > 50000) {
-                console.log('Warning: Image is quite large, may not display properly in GitHub');
-              }
-              
-              const imageData = fs.readFileSync('detailedEvolutionPlot.png', {encoding: 'base64'});
-              const shortSha = process.env.HEAD_SHA.substring(0, 7);
-              
-              const commentBody = \`![badge]
-
-            ## Build Successful!
-
-            Your COMPAS compilation and test suite completed successfully!
-
-            | Item | Value |
-            |------|-------|
-            | **Commit** | [\\\`\${shortSha}\\\`](https://github.com/\${context.repo.owner}/\${context.repo.repo}/commit/\${process.env.HEAD_SHA}) |
-            | **Logs** | [View workflow logs](\${process.env.JOB_PATH}) |
-            | **Artifact** | [Download evolution plot](\${process.env.ARTIFACT_DL}) |
-
-            ### Detailed Evolution Plot
-
-            <details>
-            <summary>Click to view/hide evolution plot</summary>
-
-            ![Detailed Evolution Plot](data:image/png;base64,\${imageData})
-
-            </details>
-
-            ---
-            <sub>Generated by COMPAS CI • [View workflow run](\${process.env.JOB_PATH})</sub>
-
-            [badge]: https://img.shields.io/badge/Build_Success-28a745?style=for-the-badge&logo=github-actions&logoColor=white\`;
-
-              await github.rest.issues.createComment({
-                issue_number: parseInt(process.env.PR_NUMBER),
-                owner: context.repo.owner,
-                repo: context.repo.repo,
-                body: commentBody
-              });
-              
-              console.log(`Successfully commented on PR #${process.env.PR_NUMBER} with artifact`);
-              
-            } catch (error) {
-              console.error('Error creating comment with artifact:', error);
-              
-              // Fallback: create comment without image
-              const fallbackBody = \`![badge]
-
-            ## Build Successful!
-
-            Your COMPAS compilation completed successfully, but there was an issue displaying the evolution plot.
-
-            | Item | Value |
-            |------|-------|
-            | **Commit** | [\\\`\${process.env.HEAD_SHA.substring(0, 7)}\\\`](https://github.com/\${context.repo.owner}/\${context.repo.repo}/commit/\${process.env.HEAD_SHA}) |
-            | **Logs** | [View workflow logs](\${process.env.JOB_PATH}) |
-            | **Artifact** | [Download evolution plot](\${process.env.ARTIFACT_DL}) |
-
-            **Note:** Evolution plot could not be embedded (\${error.message})
-
-            ---
-            <sub>Generated by COMPAS CI • [View workflow run](\${process.env.JOB_PATH})</sub>
-
-            [badge]: https://img.shields.io/badge/Build_Success-28a745?style=for-the-badge&logo=github-actions&logoColor=white\`;
-
-              await github.rest.issues.createComment({
-                issue_number: parseInt(process.env.PR_NUMBER),
-                owner: context.repo.owner,
-                repo: context.repo.repo,
-                body: fallbackBody
-              });
-              
-              console.log(`Created fallback comment on PR #${process.env.PR_NUMBER}`);
-            }
-
-      - name: Create success comment without artifact
-        if: env.PR_NUMBER != '' && env.ARTIFACT_ID == ''
-        env:
-          JOB_PATH: "${{ github.server_url }}/${{ github.repository }}/actions/runs/${{ env.PREVIOUS_JOB_ID }}"
-        uses: actions/github-script@v7
-        with:
-          github-token: ${{secrets.GITHUB_TOKEN}}
-          script: |
-            const shortSha = process.env.HEAD_SHA.substring(0, 7);
-            
-            const commentBody = \`![badge]
-
-            ## Build Successful!
-
-            Your COMPAS compilation and test suite completed successfully!
-
-            | Item | Value |
-            |------|-------|
-            | **Commit** | [\\\`\${shortSha}\\\`](https://github.com/\${context.repo.owner}/\${context.repo.repo}/commit/\${process.env.HEAD_SHA}) |
-            | **Logs** | [View workflow logs](\${process.env.JOB_PATH}) |
-
-            **Note:** The detailed evolution plot artifact was not found or is not yet available. This might be expected if the plot generation step was skipped or failed.
-
-            ---
-            <sub>Generated by COMPAS CI • [View workflow run](\${process.env.JOB_PATH})</sub>
-
-            [badge]: https://img.shields.io/badge/Build_Success-28a745?style=for-the-badge&logo=github-actions&logoColor=white\`;
-
-            await github.rest.issues.createComment({
-              issue_number: parseInt(process.env.PR_NUMBER),
-              owner: context.repo.owner,
-              repo: context.repo.repo,
-              body: commentBody
-            });
-            
-            console.log(`Successfully commented on PR #${process.env.PR_NUMBER} (no artifact)`);
-
-      - name: Debug info for non-PR runs
-        if: env.PR_NUMBER == ''
-        run: |
-          echo "This workflow run was not associated with a pull request"
-          echo "Head SHA: ${{ github.event.workflow_run.head_sha }}"
-          echo "Event: ${{ github.event.workflow_run.event }}"
-          echo "Branch: ${{ github.event.workflow_run.head_branch }}"
-          echo "This is normal for direct pushes to main/dev branches"
\ No newline at end of file

From 43f2c6cc5d4b773e45d471c9df1d77baf9b9bc27 Mon Sep 17 00:00:00 2001
From: avi <avi.vajpeyi@gmail.com>
Date: Thu, 11 Sep 2025 12:23:27 +1200
Subject: [PATCH 09/11] fix bad SHA

---
 .github/workflows/compas-compile-ci.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/compas-compile-ci.yml b/.github/workflows/compas-compile-ci.yml
index 56130fd8f..7341b07b0 100644
--- a/.github/workflows/compas-compile-ci.yml
+++ b/.github/workflows/compas-compile-ci.yml
@@ -131,7 +131,7 @@ jobs:
           echo "" >> report.md
           echo "| Item | Value |" >> report.md
           echo "|------|-------|" >> report.md
-          echo "| **Commit** | [\`${GITHUB_SHA:0:7}\`](${GITHUB_SERVER_URL}/${GITHUB_REPOSITORY}/commit/${GITHUB_SHA}) |" >> report.md
+          echo "| **Commit** | [\`$(echo $GITHUB_SHA | cut -c1-7)\`](${GITHUB_SERVER_URL}/${GITHUB_REPOSITORY}/commit/${GITHUB_SHA}) |" >> report.md
           echo "| **Logs** | [View workflow](${GITHUB_SERVER_URL}/${GITHUB_REPOSITORY}/actions/runs/${GITHUB_RUN_ID}) |" >> report.md
           echo "" >> report.md
           

From 524353023ff60aa7fa8ff1dd81609d43c19ddc8b Mon Sep 17 00:00:00 2001
From: avi <avi.vajpeyi@gmail.com>
Date: Thu, 11 Sep 2025 12:34:23 +1200
Subject: [PATCH 10/11] need to checkout at start of the CI

---
 .github/workflows/compas-compile-ci.yml | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/.github/workflows/compas-compile-ci.yml b/.github/workflows/compas-compile-ci.yml
index 7341b07b0..3d3aefe4c 100644
--- a/.github/workflows/compas-compile-ci.yml
+++ b/.github/workflows/compas-compile-ci.yml
@@ -118,6 +118,9 @@ jobs:
       ARTIFACT_NAME: detailedEvolutionPlot.png
 
     steps:
+      - name: Checkout repository
+        uses: actions/checkout@v4
+
       - name: Download evolution plot
         uses: actions/download-artifact@v4
         with:

From 5b0f9b518219e992d4052653a2814c8b3631d14d Mon Sep 17 00:00:00 2001
From: avi <avi.vajpeyi@gmail.com>
Date: Thu, 11 Sep 2025 12:51:47 +1200
Subject: [PATCH 11/11] edit comment

---
 .github/workflows/compas-compile-ci.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/compas-compile-ci.yml b/.github/workflows/compas-compile-ci.yml
index 3d3aefe4c..4ee1eb40d 100644
--- a/.github/workflows/compas-compile-ci.yml
+++ b/.github/workflows/compas-compile-ci.yml
@@ -139,7 +139,7 @@ jobs:
           echo "" >> report.md
           
           if [ -f "${{ env.ARTIFACT_NAME }}" ]; then
-            echo "### 📊 Detailed Evolution Plot" >> report.md
+            echo "### Detailed Evolution Plot" >> report.md
             echo "<details><summary>Click to view evolution plot</summary>" >> report.md
             echo "" >> report.md
             echo "![](./${{ env.ARTIFACT_NAME }})" >> report.md
@@ -150,7 +150,7 @@ jobs:
           
           echo "" >> report.md
           echo "---" >> report.md
-          echo "<sub>Generated by COMPAS CI with CML</sub>" >> report.md
+          echo "<sub>Generated by COMPAS CI </sub>" >> report.md
           
           # Post the report using CML
           cml comment create report.md
\ No newline at end of file