nies.properties.orig

### MISCELLANEOUS ###
# These locations are with respect to the server:
nies.metadataDirectory=/usr0/share/nies/yeast/data/
# *Parent* directory must exist on server to trigger initialization; otherwise uses the existing DB
nies.userdb=/usr0/share/nies/yeast/nies_userdb
nies.relevancedb=/usr0/share/nies/yeast/mb_reldb

# Directory must already exist on server.
nies.readinghistory=/usr0/share/nies/yeast/PRA/UserHistory

# For Paper, Gene, Author, and PMPaper tabs; must be findable in ${nies.metadataDirectory}
nies.paperCollection=pmid.sgd.crawl.ex

# For AjaxStrings servlet. Must be findable in ${nies.metadataDirectory}
nies.ajaxStringsFile=model.cite,model.read

# Uncomment to add a default query or space-delimited list of stop edges.
# These can also be configured at runtime from the admin settings page of the webapp.
# nies.defaultQuery=woolford
# nies.stopEdges=hasGoTerm

# Uncomment to show additional fields in the search form (default is just keywords and depth)
# Space-separated list of fields from {genes} (boring for now I know ^_^)
#nies.extraSearchFields=genes


### SEARCH ALGORITHM CONFIGURATION:

# Comma-separated list of names of search algorithms to provide. These will be configured below.
nies = Search,ModelBasedSearch

# For each searcher specify:
# 	nies.searcher.[searchername] = [corresponding action name from struts.xml]
# 	neis.searcher.[searchername].tabs = [comma-separated list of tabs configured below]

nies.searcher.Search=Search
nies.searcher.Search.tabs=Papers,Genes,Authors,Explore

nies.searcher.ModelBasedSearch=ModelBasedSearch
nies.searcher.ModelBasedSearch.tabs=Papers,Reasons,Explore

# If an attribute has more than this many values, the list will be truncated (for both server and client performance issues)
nies.alltab.attributes.maxvalues=100

### TAB CONFIGURATION:

# Begin with:
#	nies.tab.[tabname]=[displayType from nies.ui.Tab]
#	nies.tab.[tabname].title=[string to display in the row of tabs along the top of the results interface]

# For each "configurable"-type tab, specify:
# 	nies.tab.[tabname].filter=[ghirl.graph.NodeFilter filter string that selects nodes displayable by this tab]
#	nies.tab.[tabname].label=[ghirl.graph.PathSearcher path that will retrieve the title of the result. Leave blank to use the nodename.]
#	nies.tab.[tabname].attributes=[comma-separated list of attribute titles; spaces are allowed]
#	nies.tab.[tabname].attribute.[attribute_title]=[ghirl.graph.PathSearcher path that will retrieve the attribute values. Also note spaces in the attribute title have been replaced with '_']

nies.tab.All=tab
nies.tab.All.title=All (debug)

nies.tab.Reasons=pmpaper
nies.tab.Reasons.title=Reasons

nies.tab.Explore=explore
nies.tab.Explore.title=Explore

nies.tab.Papers=configurable
nies.tab.Papers.title=Papers
nies.tab.Papers.filter=hasTitle=*
nies.tab.Papers.label=hasTitle
nies.tab.Papers.attributes=Journal,Authors,Genes,Year,PMID,Abstract
nies.tab.Papers.attribute.Journal=Journal
nies.tab.Papers.attribute.Authors=hasAuthor
nies.tab.Papers.attribute.Genes=Gene
nies.tab.Papers.attribute.Year=Year
nies.tab.Papers.attribute.PMID=hasTitle _hasTitle
nies.tab.Papers.attribute.Abstract=hasAbstract

nies.tab.Genes=configurable
nies.tab.Genes.title=Genes
nies.tab.Genes.filter=_Gene=*
nies.tab.Genes.label=
#nies.Genes.attributes=Full Name,Synonyms,Researchers,Publications
nies.tab.Genes.attributes=Researchers,Publications
nies.tab.Genes.attribute.Full_Name=hasSynonymInverse hasFullName
nies.tab.Genes.attribute.Synonyms=hasSynonymInverse hasSynonym
nies.tab.Genes.attribute.Publications=_Gene hasTitle
nies.tab.Genes.attribute.Researchers=_Gene hasAuthor

nies.tab.Authors=configurable
nies.tab.Authors.title="Authors"
nies.tab.Authors.filter=_hasAuthor=*
nies.tab.Authors.label=
nies.tab.Authors.attributes=Publications,Coauthors,Genes
nies.tab.Authors.attribute.Publications=_hasAuthor hasTitle
nies.tab.Authors.attribute.Coauthors=_hasAuthor hasAuthor
nies.tab.Authors.attribute.Genes=_hasAuthor Gene