pyproject.toml

[project]
name = "cuisto"
version = "2024.12.19.1"
authors = [{ name = "Guillaume Le Goc", email = "g.legoc@posteo.org" }]
description = "Quantification of objects in histological slices"
readme = "README.md"
requires-python = ">=3.12"

license = { text = "MIT" }

classifiers = ["Programming Language :: Python :: 3.12"]

dependencies = [
  "brainglobe-atlasapi>=2.0.7",
  "brainglobe-heatmap>=0.5.4",
  "brainrender>=2.1.14",
  "geojson>=3.1.0",
  "h5py>=3.11",
  "ipykernel",
  "ipympl",
  "ipywidgets",
  "matplotlib>=3.9.0",
  "notebook",
  "numpy>=2",
  "orjson>=3.10.3",
  "pandas[performance]>2.2.2",
  "paquo>=0.8.0",
  "scikit-image>0.22.0",
  "seaborn>=0.13.2",
  "shapely>=2.0.4",
  "skan>=0.12.0",
  "tables>=3.10.1",
  "tifffile>=2024.4.24",
  "tqdm",
  "typer",
]

[project.optional-dependencies]
doc = [
  "mkdocs",
  "mkdocstrings",
  "mkdocstrings-python",
  "mkdocs-material",
  "mkdocs-jupyter",
  "mkdocs-git-revision-date-localized-plugin",
]

[project.urls]
"Source Code" = "https://github.com/TeamNCMC/cuisto"

[build-system]
requires = ["hatchling"]
build-backend = "hatchling.build"

[tool.hatch.build]
include = ["cuisto"]

[tool.ruff]
line-length = 88
extend-include = ["*.ipynb"]