From 1f9204a3ad4433c0a04eccaf1e2a5282c2e8f202 Mon Sep 17 00:00:00 2001
From: giladmaya <46792160+giladmaya@users.noreply.github.com>
Date: Mon, 11 Mar 2024 18:02:49 +0200
Subject: [PATCH] Fixed configurations (#12)

---
 src/pd_dwi/configurations/xgboost/F.yaml        | 17 ++++++++++++-----
 .../configurations/xgboost/adc0100600800.yaml   | 16 ++++++++++++----
 .../configurations/xgboost/adc100600800.yaml    | 17 ++++++++++++-----
 3 files changed, 36 insertions(+), 14 deletions(-)

diff --git a/src/pd_dwi/configurations/xgboost/F.yaml b/src/pd_dwi/configurations/xgboost/F.yaml
index af476b1..34973fa 100644
--- a/src/pd_dwi/configurations/xgboost/F.yaml
+++ b/src/pd_dwi/configurations/xgboost/F.yaml
@@ -16,11 +16,18 @@ dataset:
 
 pipeline:
   features_transformer:
-    radiomics:
-      imageType:
-        Original: {}
-      setting:
-        resampledPixelSpacing:  [1.27,1.27,4.0]
+      encoders: # encoder names format is {time point}_{image}
+        - image: F
+          mask: DWI MASK
+          time_points:
+            - T0
+            - T1
+            - T2
+      engine:
+        imageType:
+          Original: { }
+        setting:
+          resampledPixelSpacing: [ 1.27,1.27,4.0 ]
   feature_selection:
     k: 100
   classifier:
diff --git a/src/pd_dwi/configurations/xgboost/adc0100600800.yaml b/src/pd_dwi/configurations/xgboost/adc0100600800.yaml
index 541dbb6..96d1182 100644
--- a/src/pd_dwi/configurations/xgboost/adc0100600800.yaml
+++ b/src/pd_dwi/configurations/xgboost/adc0100600800.yaml
@@ -17,10 +17,18 @@ dataset:
 pipeline:
   features_transformer:
     radiomics:
-      imageType:
-        Original: {}
-      setting:
-        resampledPixelSpacing:  [1.27,1.27,4.0]
+      encoders: # encoder names format is {time point}_{image}
+        - image: ADC 0100600800
+          mask: DWI MASK
+          time_points:
+            - T0
+            - T1
+            - T2
+      engine:
+        imageType:
+          Original: {}
+        setting:
+          resampledPixelSpacing:  [1.27,1.27,4.0]
   feature_selection:
     k: 100
   classifier:
diff --git a/src/pd_dwi/configurations/xgboost/adc100600800.yaml b/src/pd_dwi/configurations/xgboost/adc100600800.yaml
index d36135a..a72496c 100644
--- a/src/pd_dwi/configurations/xgboost/adc100600800.yaml
+++ b/src/pd_dwi/configurations/xgboost/adc100600800.yaml
@@ -16,11 +16,18 @@ dataset:
 
 pipeline:
   features_transformer:
-    radiomics:
-      imageType:
-        Original: {}
-      setting:
-        resampledPixelSpacing:  [1.27,1.27,4.0]
+      encoders: # encoder names format is {time point}_{image}
+        - image: ADC 100600800
+          mask: DWI MASK
+          time_points:
+            - T0
+            - T1
+            - T2
+      engine:
+        imageType:
+          Original: {}
+        setting:
+          resampledPixelSpacing:  [1.27,1.27,4.0]
   feature_selection:
     k: 100
   classifier: