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sub-001_ses-005_task-rest_dir-PA_bold.html
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<title>sub-001_ses-005_task-rest_dir-PA_bold :: MRIQC's BOLD fMRI report</title>
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<a class="nav-link dropdown-toggle" id="navbarBasic echo-wise reports" role="button" data-bs-toggle="dropdown" aria-expanded="false" href="#Basic echo-wise reports">
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<li><a class="dropdown-item" href="#datatype-figures_desc-stdev_direction-PA_echo-1_session-005_subject-001_suffix-bold_task-rest">Reports for: echo <span class="bids-entity">1</span>.</a></li>
<li><a class="dropdown-item" href="#datatype-figures_desc-stdev_direction-PA_echo-2_session-005_subject-001_suffix-bold_task-rest">Reports for: echo <span class="bids-entity">2</span>.</a></li>
<li><a class="dropdown-item" href="#datatype-figures_desc-stdev_direction-PA_echo-3_session-005_subject-001_suffix-bold_task-rest">Reports for: echo <span class="bids-entity">3</span>.</a></li>
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<a class="nav-link dropdown-toggle" id="navbarExtended echo-wise reports" role="button" data-bs-toggle="dropdown" aria-expanded="false" href="#Extended echo-wise reports">
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<li><a class="dropdown-item" href="#datatype-figures_desc-mean_direction-PA_echo-1_session-005_subject-001_suffix-bold_task-rest">Reports for: echo <span class="bids-entity">1</span>.</a></li>
<li><a class="dropdown-item" href="#datatype-figures_desc-mean_direction-PA_echo-2_session-005_subject-001_suffix-bold_task-rest">Reports for: echo <span class="bids-entity">2</span>.</a></li>
<li><a class="dropdown-item" href="#datatype-figures_desc-mean_direction-PA_echo-3_session-005_subject-001_suffix-bold_task-rest">Reports for: echo <span class="bids-entity">3</span>.</a></li>
<li><a class="dropdown-item" href="#datatype-figures_desc-mean_direction-PA_echo-4_session-005_subject-001_suffix-bold_task-rest">Reports for: echo <span class="bids-entity">4</span>.</a></li>
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<div id="Basic echo-wise reports" class="mt-5">
<h1 class="sub-report-title pt-5 ps-4">Basic echo-wise reports</h1>
<div id="datatype-figures_desc-stdev_direction-PA_echo-1_session-005_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
<h2 class="sub-report-group mt-4">Reports for: echo <span class="bids-entity">1</span>.</h2><h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p> <div class="reportlet">
<img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-1_desc-stdev_bold.svg" style="width: 100%" />
</div>
<small>Get figure file: <a href="./sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-1_desc-stdev_bold.svg" target="_blank">sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-1_desc-stdev_bold.svg</a></small>
</div>
<div id="datatype-figures_desc-background_direction-PA_echo-1_session-005_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
<h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
<img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-1_desc-background_bold.svg" style="width: 100%" />
</div>
<small>Get figure file: <a href="./sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-1_desc-background_bold.svg" target="_blank">sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-1_desc-background_bold.svg</a></small>
</div>
<div id="datatype-figures_desc-zoomed_direction-PA_echo-1_session-005_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
<img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-1_desc-zoomed_bold.svg" style="width: 100%" />
</div>
<small>Get figure file: <a href="./sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-1_desc-zoomed_bold.svg" target="_blank">sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-1_desc-zoomed_bold.svg</a></small>
</div>
<div id="datatype-figures_desc-carpet_direction-PA_echo-1_session-005_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
<h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.</p> <div class="reportlet">
<img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-1_desc-carpet_bold.svg" style="width: 100%" />
</div>
<small>Get figure file: <a href="./sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-1_desc-carpet_bold.svg" target="_blank">sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-1_desc-carpet_bold.svg</a></small>
</div>
<div id="datatype-figures_desc-stdev_direction-PA_echo-2_session-005_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
<h2 class="sub-report-group mt-4">Reports for: echo <span class="bids-entity">2</span>.</h2><h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p> <div class="reportlet">
<img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-2_desc-stdev_bold.svg" style="width: 100%" />
</div>
<small>Get figure file: <a href="./sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-2_desc-stdev_bold.svg" target="_blank">sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-2_desc-stdev_bold.svg</a></small>
</div>
<div id="datatype-figures_desc-background_direction-PA_echo-2_session-005_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
<h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
<img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-2_desc-background_bold.svg" style="width: 100%" />
</div>
<small>Get figure file: <a href="./sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-2_desc-background_bold.svg" target="_blank">sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-2_desc-background_bold.svg</a></small>
</div>
<div id="datatype-figures_desc-zoomed_direction-PA_echo-2_session-005_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
<img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-2_desc-zoomed_bold.svg" style="width: 100%" />
</div>
<small>Get figure file: <a href="./sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-2_desc-zoomed_bold.svg" target="_blank">sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-2_desc-zoomed_bold.svg</a></small>
</div>
<div id="datatype-figures_desc-carpet_direction-PA_echo-2_session-005_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
<h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.</p> <div class="reportlet">
<img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-2_desc-carpet_bold.svg" style="width: 100%" />
</div>
<small>Get figure file: <a href="./sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-2_desc-carpet_bold.svg" target="_blank">sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-2_desc-carpet_bold.svg</a></small>
</div>
<div id="datatype-figures_desc-stdev_direction-PA_echo-3_session-005_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
<h2 class="sub-report-group mt-4">Reports for: echo <span class="bids-entity">3</span>.</h2><h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p> <div class="reportlet">
<img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-3_desc-stdev_bold.svg" style="width: 100%" />
</div>
<small>Get figure file: <a href="./sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-3_desc-stdev_bold.svg" target="_blank">sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-3_desc-stdev_bold.svg</a></small>
</div>
<div id="datatype-figures_desc-background_direction-PA_echo-3_session-005_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
<h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
<img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-3_desc-background_bold.svg" style="width: 100%" />
</div>
<small>Get figure file: <a href="./sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-3_desc-background_bold.svg" target="_blank">sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-3_desc-background_bold.svg</a></small>
</div>
<div id="datatype-figures_desc-zoomed_direction-PA_echo-3_session-005_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
<img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-3_desc-zoomed_bold.svg" style="width: 100%" />
</div>
<small>Get figure file: <a href="./sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-3_desc-zoomed_bold.svg" target="_blank">sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-3_desc-zoomed_bold.svg</a></small>
</div>
<div id="datatype-figures_desc-carpet_direction-PA_echo-3_session-005_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
<h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.</p> <div class="reportlet">
<img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-3_desc-carpet_bold.svg" style="width: 100%" />
</div>
<small>Get figure file: <a href="./sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-3_desc-carpet_bold.svg" target="_blank">sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-3_desc-carpet_bold.svg</a></small>
</div>
<div id="datatype-figures_desc-stdev_direction-PA_echo-4_session-005_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
<h2 class="sub-report-group mt-4">Reports for: echo <span class="bids-entity">4</span>.</h2><h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p> <div class="reportlet">
<img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-4_desc-stdev_bold.svg" style="width: 100%" />
</div>
<small>Get figure file: <a href="./sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-4_desc-stdev_bold.svg" target="_blank">sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-4_desc-stdev_bold.svg</a></small>
</div>
<div id="datatype-figures_desc-background_direction-PA_echo-4_session-005_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
<h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
<img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-4_desc-background_bold.svg" style="width: 100%" />
</div>
<small>Get figure file: <a href="./sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-4_desc-background_bold.svg" target="_blank">sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-4_desc-background_bold.svg</a></small>
</div>
<div id="datatype-figures_desc-zoomed_direction-PA_echo-4_session-005_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
<img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-4_desc-zoomed_bold.svg" style="width: 100%" />
</div>
<small>Get figure file: <a href="./sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-4_desc-zoomed_bold.svg" target="_blank">sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-4_desc-zoomed_bold.svg</a></small>
</div>
<div id="datatype-figures_desc-carpet_direction-PA_echo-4_session-005_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
<h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.</p> <div class="reportlet">
<img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-4_desc-carpet_bold.svg" style="width: 100%" />
</div>
<small>Get figure file: <a href="./sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-4_desc-carpet_bold.svg" target="_blank">sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-4_desc-carpet_bold.svg</a></small>
</div>
</div>
<div id="Extended echo-wise reports" class="mt-5">
<h1 class="sub-report-title pt-5 ps-4">Extended echo-wise reports</h1>
<div id="datatype-figures_desc-mean_direction-PA_echo-1_session-005_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
<h2 class="sub-report-group mt-4">Reports for: echo <span class="bids-entity">1</span>.</h2><h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p> <div class="reportlet">
<img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-1_desc-mean_bold.svg" style="width: 100%" />
</div>
<small>Get figure file: <a href="./sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-1_desc-mean_bold.svg" target="_blank">sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-1_desc-mean_bold.svg</a></small>
</div>
<div id="datatype-figures_desc-mean_direction-PA_echo-2_session-005_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
<h2 class="sub-report-group mt-4">Reports for: echo <span class="bids-entity">2</span>.</h2><h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p> <div class="reportlet">
<img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-2_desc-mean_bold.svg" style="width: 100%" />
</div>
<small>Get figure file: <a href="./sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-2_desc-mean_bold.svg" target="_blank">sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-2_desc-mean_bold.svg</a></small>
</div>
<div id="datatype-figures_desc-mean_direction-PA_echo-3_session-005_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
<h2 class="sub-report-group mt-4">Reports for: echo <span class="bids-entity">3</span>.</h2><h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p> <div class="reportlet">
<img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-3_desc-mean_bold.svg" style="width: 100%" />
</div>
<small>Get figure file: <a href="./sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-3_desc-mean_bold.svg" target="_blank">sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-3_desc-mean_bold.svg</a></small>
</div>
<div id="datatype-figures_desc-mean_direction-PA_echo-4_session-005_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
<h2 class="sub-report-group mt-4">Reports for: echo <span class="bids-entity">4</span>.</h2><h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p> <div class="reportlet">
<img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-4_desc-mean_bold.svg" style="width: 100%" />
</div>
<small>Get figure file: <a href="./sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-4_desc-mean_bold.svg" target="_blank">sub-001/figures/sub-001_ses-005_task-rest_dir-PA_echo-4_desc-mean_bold.svg</a></small>
</div>
</div>
<div id="Extended reports shared across echos" class="mt-5">
<h1 class="sub-report-title pt-5 ps-4">Extended reports shared across echos</h1>
<div id="datatype-figures_desc-brainmask_direction-PA_session-005_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
<h3 class="run-title mt-3">Brain extraction performance</h3><p class="elem-caption">Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.</p> <div class="reportlet">
<img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-005_task-rest_dir-PA_desc-brainmask_bold.svg" style="width: 100%" />
</div>
<small>Get figure file: <a href="./sub-001/figures/sub-001_ses-005_task-rest_dir-PA_desc-brainmask_bold.svg" target="_blank">sub-001/figures/sub-001_ses-005_task-rest_dir-PA_desc-brainmask_bold.svg</a></small>
</div>
<div id="datatype-figures_desc-norm_direction-PA_session-005_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
<h3 class="run-title mt-3">Spatial normalization of the anatomical image</h3><p class="elem-caption">This panel shows a <em>quick-and-dirty</em> nonlinear registration into the <code>MNI152NLin2009cAsym</code> template accessed with <a href="https://templateflow.org/browse" target="_blank"><em>TemplateFlow</em></a>.</p> <div class="reportlet">
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<small>Get figure file: <a href="./sub-001/figures/sub-001_ses-005_task-rest_dir-PA_desc-norm_bold.svg" target="_blank">sub-001/figures/sub-001_ses-005_task-rest_dir-PA_desc-norm_bold.svg</a></small>
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<div id="About" class="mt-5">
<h1 class="sub-report-title pt-5 ps-4">About</h1>
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<h2 class="sub-report-group mt-4">Errors</h2> <p class="alert alert-success" role="alert">No errors to report!</p>
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<h2 class="sub-report-group mt-4">Reproducibility and provenance information</h2><p class="elem-caption">Thanks for using <em>MRIQC</em>. The following information may assist in
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<tr><td colspan=2>Execution environment</td><td>singularity</td></tr>
<tr><td colspan=2>Input filename</td><td><BIDS root>/sub-001/ses-005/func/sub-001_ses-005_task-rest_dir-PA_echo-1_part-mag_bold.nii.gz</td></tr>
<tr><td>Versions</td><td>MRIQC</td><td>24.1.0.dev0+g3fe90466.d20240417</td></tr>
<tr><td>Versions</td><td>NiPype</td><td>1.8.6</td></tr>
<tr><td>Versions</td><td>TemplateFlow</td><td>24.2.0</td></tr>
<tr><td colspan=2>md5sum</td><td>0346db745eb90003439b9d8474528a1c</td></tr>
</table>
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Dataset Information
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<table id="about-metadata-table-1" class="table table-sm table-striped">
<tr><td>AcquisitionDuration</td><td>1230.47</td></tr>
<tr><td>AcquisitionMatrixPE</td><td>96</td></tr>
<tr><td>AcquisitionTime</td><td>10:33:53.380000</td></tr>
<tr><td>B0FieldSource</td><td>['005pepolarbold', '005phasediff']</td></tr>
<tr><td>BandwidthPerPixelPhaseEncode</td><td>37.879</td></tr>
<tr><td>BaseResolution</td><td>96</td></tr>
<tr><td>DerivedVendorReportedEchoSpacing</td><td>0.000549997</td></tr>
<tr><td>DwellTime</td><td>2.3e-06</td></tr>
<tr><td>EchoNumber</td><td>1</td></tr>
<tr><td>EchoTime</td><td>0.0126</td></tr>
<tr><td>EchoTrainLength</td><td>35</td></tr>
<tr><td>EffectiveEchoSpacing</td><td>0.000274998</td></tr>
<tr><td>FlipAngle</td><td>64</td></tr>
<tr><td>ImageOrientationPatientDICOM</td><td>[0.998823, -0.0108809, 0.0472612, 0.0278997, 0.926022, -0.376438]</td></tr>
<tr><td>ImageType</td><td>['ORIGINAL', 'PRIMARY', 'FMRI', 'NONE']</td></tr>
<tr><td>ImageTypeText</td><td>['ORIGINAL', 'PRIMARY', 'M', 'MB', 'TE1', 'DIS2D']</td></tr>
<tr><td>InPlanePhaseEncodingDirectionDICOM</td><td>COL</td></tr>
<tr><td>PercentPhaseFOV</td><td>100</td></tr>
<tr><td>PhaseEchoTime1</td><td>0.0126</td></tr>
<tr><td>PhaseEchoTime2</td><td>0.03304</td></tr>
<tr><td>PhaseEncodingDirection</td><td>j</td></tr>
<tr><td>PixelBandwidth</td><td>2264</td></tr>
<tr><td>ProtocolName</td><td>func-bold_task-rest_dir-PA__cmrr_me4_sms4</td></tr>
<tr><td>PulseSequenceName</td><td>epfid2d4_96</td></tr>
<tr><td>ReceiveCoilActiveElements</td><td>HC1-7;NC1</td></tr>
<tr><td>ReconMatrixPE</td><td>96</td></tr>
<tr><td>RefLinesPE</td><td>22</td></tr>
<tr><td>RepetitionTime</td><td>1.6</td></tr>
<tr><td>SequenceVariant</td><td>SK\SS</td></tr>
<tr><td>SeriesDescription</td><td>func-bold_task-rest_dir-PA__cmrr_me4_sms4</td></tr>
<tr><td>SeriesNumber</td><td>21</td></tr>
<tr><td>ShimSetting</td><td>[8235, -5616, -6013, 703, -71, -212, -27, 66]</td></tr>
<tr><td>SliceThickness</td><td>2.2</td></tr>
<tr><td>SliceTiming</td><td>[0, 0.8425, 0.105, 0.9475, 0.21, 1.0525, 0.315, 1.1575, 0.42, 1.2625, 0.525, 1.3675, 0.63, 1.475, 0.7375, 0, 0.8425, 0.105, 0.9475, 0.21, 1.0525, 0.315, 1.1575, 0.42, 1.2625, 0.525, 1.3675, 0.63, 1.475, 0.7375, 0, 0.8425, 0.105, 0.9475, 0.21, 1.0525, 0.315, 1.1575, 0.42, 1.2625, 0.525, 1.3675, 0.63, 1.475, 0.7375, 0, 0.8425, 0.105, 0.9475, 0.21, 1.0525, 0.315, 1.1575, 0.42, 1.2625, 0.525, 1.3675, 0.63, 1.475, 0.7375]</td></tr>
<tr><td>SpacingBetweenSlices</td><td>2.2</td></tr>
<tr><td>TotalReadoutTime</td><td>0.0261249</td></tr>
<tr><td>TxRefAmp</td><td>240.229</td></tr>
<tr><td>WipMemBlock</td><td>1ee21371-eec5-41f6-beec-8865d43bc45d||Sequence: R017 nxva30a/master r/d34922cc2+; Jun 27 2022 13:20:16 by eja</td></tr>
</table>
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Extracted Image quality metrics (IQMs)
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<tr><td colspan=3>aor</td><td>[0.00016045333333333334, 0.00015069333333333335, 0.00020738666666666664, 0.0003160666666666667]</td></tr>
<tr><td colspan=3>aqi</td><td>[0.006999677760000001, 0.00721888016, 0.012554546186666665, 0.021748077066666666]</td></tr>
<tr><td colspan=3>dummy_trs</td><td>0</td></tr>
<tr><td>dvars</td><td colspan=2>nstd</td><td>26.798150853271004</td></tr>
<tr><td>dvars</td><td colspan=2>std</td><td>1.0004118375834454</td></tr>
<tr><td>dvars</td><td colspan=2>vstd</td><td>0.9771762087850477</td></tr>
<tr><td colspan=3>efc</td><td>0.586</td></tr>
<tr><td colspan=3>fber</td><td>561.5105</td></tr>
<tr><td>fd</td><td colspan=2>mean</td><td>0.11229281412431537</td></tr>
<tr><td>fd</td><td colspan=2>num</td><td>58</td></tr>
<tr><td>fd</td><td colspan=2>perc</td><td>7.733333333333333</td></tr>
<tr><td>fwhm</td><td colspan=2>avg</td><td>3.639204342584984</td></tr>
<tr><td>fwhm</td><td colspan=2>x</td><td>3.290970428204707</td></tr>
<tr><td>fwhm</td><td colspan=2>y</td><td>3.732797229401616</td></tr>
<tr><td>fwhm</td><td colspan=2>z</td><td>3.893845370148629</td></tr>
<tr><td colspan=3>gcor</td><td>[0.00952644, 0.0176884, 0.0156646, 0.01368]</td></tr>
<tr><td>gsr</td><td colspan=2>x</td><td>-0.004188209772109985</td></tr>
<tr><td>gsr</td><td colspan=2>y</td><td>0.11089065670967102</td></tr>
<tr><td>size</td><td colspan=2>t</td><td>750</td></tr>
<tr><td>size</td><td colspan=2>x</td><td>96</td></tr>
<tr><td>size</td><td colspan=2>y</td><td>96</td></tr>
<tr><td>size</td><td colspan=2>z</td><td>60</td></tr>
<tr><td colspan=3>snr</td><td>2.5945856963914227</td></tr>
<tr><td>spacing</td><td colspan=2>tr</td><td>1.600000023841858</td></tr>
<tr><td>spacing</td><td colspan=2>x</td><td>2.197920083999634</td></tr>
<tr><td>spacing</td><td colspan=2>y</td><td>2.197920083999634</td></tr>
<tr><td>spacing</td><td colspan=2>z</td><td>2.200000047683716</td></tr>
<tr><td>summary</td><td>bg</td><td>k</td><td>10.7007</td></tr>
<tr><td>summary</td><td>bg</td><td>mad</td><td>21.0332</td></tr>
<tr><td>summary</td><td>bg</td><td>mean</td><td>130.0767</td></tr>
<tr><td>summary</td><td>bg</td><td>median</td><td>33.0</td></tr>
<tr><td>summary</td><td>bg</td><td>n</td><td>417929.0</td></tr>
<tr><td>summary</td><td>bg</td><td>p05</td><td>0.0</td></tr>
<tr><td>summary</td><td>bg</td><td>p95</td><td>634.0</td></tr>
<tr><td>summary</td><td>bg</td><td>stdv</td><td>228.7966</td></tr>
<tr><td>summary</td><td>fg</td><td>k</td><td>0.6831</td></tr>
<tr><td>summary</td><td>fg</td><td>mad</td><td>300.6381</td></tr>
<tr><td>summary</td><td>fg</td><td>mean</td><td>818.4354</td></tr>
<tr><td>summary</td><td>fg</td><td>median</td><td>791.0</td></tr>
<tr><td>summary</td><td>fg</td><td>n</td><td>135031.0</td></tr>
<tr><td>summary</td><td>fg</td><td>p05</td><td>392.0</td></tr>
<tr><td>summary</td><td>fg</td><td>p95</td><td>1344.0</td></tr>
<tr><td>summary</td><td>fg</td><td>stdv</td><td>304.8645</td></tr>
<tr><td colspan=3>tsnr</td><td>47.144496608525515</td></tr>
</table>
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<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="eye-spillover" id="qcartifacts-item-1" />
<label class="form-check-label" for="qcartifacts-item-1">Eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="noneye-spillover" id="qcartifacts-item-2" />
<label class="form-check-label" for="qcartifacts-item-2">Non-eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="coil-failure" id="qcartifacts-item-3" />
<label class="form-check-label" for="qcartifacts-item-3">Coil failure</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="noise-global" id="qcartifacts-item-4" />
<label class="form-check-label" for="qcartifacts-item-4">Global noise</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="noise-local" id="qcartifacts-item-5" />
<label class="form-check-label" for="qcartifacts-item-5">Local noise</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="em-perturbation" id="qcartifacts-item-6" />
<label class="form-check-label" for="qcartifacts-item-6"><abbr title="electromagnetic">EM</abbr> interference/perturbation</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="wrap-around" id="qcartifacts-item-7" />
<label class="form-check-label" for="qcartifacts-item-7">Problematic <abbr title="field-of-view">FoV</abbr> prescription / wrap-around</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="ghost-aliasing" id="qcartifacts-item-8" />
<label class="form-check-label" for="qcartifacts-item-8">Aliasing ghosts</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="ghost-other" id="qcartifacts-item-9" />
<label class="form-check-label" for="qcartifacts-item-9">Other ghosts (for example, <abbr title="radiofrequency">RF</abbr> spoiling)</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="inu" id="qcartifacts-item-10" />
<label class="form-check-label" for="qcartifacts-item-10">Intensity non-uniformity (B<sub>1</sub> bias)</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="field-variation" id="qcartifacts-item-11" />
<label class="form-check-label" for="qcartifacts-item-11">Temporal B<sub>1</sub> field non-uniformity variation</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="processing" id="qcartifacts-item-12" />
<label class="form-check-label" for="qcartifacts-item-12">Processing such as denoising, defacing or resamplings happened</label>
</div>
<div class="form-check form-switch small">
<input class="form-check-input" type="checkbox" name="uncategorized" id="qcartifacts-item-13" />
<label class="form-check-label" for="qcartifacts-item-13">Other uncategorized artifact(s)</label>
</div>
</fieldset>
</div> <!-- accordion-body -->
</div> <!-- accordion-collapse -->
</div> <!-- accordion-item -->
<div class="accordion-item">
<h2 class="accordion-header" id="qcextra-head">
<button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcextra-collapse" aria-expanded="false" aria-controls="qcextra-collapse">
Extra details
</button>
</h2>
<div id="qcextra-collapse" class="accordion-collapse collapse" aria-labelledby="qcextra-head">
<div class="accordion-body">
<div class="input-group">
<span class="input-group-text">Comments</span>
<textarea class="form-control" aria-label="Comments" id="qcextra-comments"></textarea>
</div>
<p style="margin-top: 20px; font-weight: bold">Rater confidence</p>
<input type="range" min="0.0" max="4.0" step="0.05" value="3.5" id="qcextra-confidence" class="slider" style="margin-left: 22%;width: 56%;">
<ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
<li class="list-group-item list-group-item-warning small" style="width: 50%; text-align:center">Doubtful</li>
<li class="list-group-item list-group-item-success bg-success text-white small" style="width: 50%; text-align:center">Confident</li>
</ul>
</div> <!-- accordion-body -->
</div> <!-- accordion-collapse -->
</div> <!-- accordion-item -->
</div>
<div style="margin-top: 10px">
<a class="btn btn-primary disabled" id="btn-download" href="">Download</a>
</div>
<script type="text/javascript">
var MINIMUM_RATING_TIME = 10
$('#qcslider').on('input', function() {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
});
$('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
});
if ( $(this).val() < 1.5 ) {
$('#qcslider-collapse .list-group-item-danger').addClass('bg-danger text-white');
} else if ( $(this).val() > 3.5 ) {
$('#qcslider-collapse .list-group-item-success').addClass('bg-success text-white');
} else if ( $(this).val() < 2.5 ) {
$('#qcslider-collapse .list-group-item-warning').addClass('bg-warning text-dark');
} else {
$('#qcslider-collapse .list-group-item-primary').addClass('bg-primary text-white');
};
var payload = read_form();
});
$('#qcextra-confidence').on('input', function() {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
});
$('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
});
if ( $(this).val() < 2.0 ) {
$('#qcextra-collapse .list-group-item-warning').addClass('bg-warning text-dark');
} else {
$('#qcextra-collapse .list-group-item-success').addClass('bg-success text-white');
};
var payload = read_form();
});
$('#qcextra-comments').bind('input propertychange', function() {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
});
$( '#btn-post' ).click( function() {
var payload = read_form();
var md5sum = "unspecified";
var params = {
'rating': payload['rating'],
'md5sum': md5sum,
'name': "",
'comment': JSON.stringify(payload['artifacts'])
};
// disable development releases
var authorization = $(this).val();
var ratingReq = new XMLHttpRequest();
ratingReq.open("POST", "https://mriqc.nimh.nih.gov:443/api/v1/rating");
ratingReq.setRequestHeader("Content-Type", "application/json;charset=UTF-8");
ratingReq.setRequestHeader("Authorization", authorization);
ratingReq.onload = function () {
status = ratingReq.status;
$('#btn-post').removeClass('btn-primary');
$('#btn-post').attr('disabled', true);
$('#btn-post').attr('aria-disabled', true);
$('#btn-post').prop('disabled');
$('#btn-post').addClass('disabled');
$('#btn-post').removeClass('active');
if (status === "201") {
$('#btn-post').addClass('btn-success');
$('#btn-post').html('Posted!');
} else {
$('#btn-post').addClass('btn-danger');
$('#btn-post').html('Failed');
};
};
ratingReq.send(JSON.stringify(params));
});
$( 'body' ).on( 'click', '#qcartifacts-group input', function(e) {
if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
$('#btn-download').removeClass('disabled');
$('#btn-download').removeAttr('aria-disabled');
$('#btn-post').removeAttr('disabled');
};
var payload = read_form();
});
$( 'body' ).on( 'click', '#qcrating-toggler', function(e) {
toggle_rating();
});
</script>
</div>
<script type="text/javascript">
function toggle(id) {
var element = document.getElementById(id);
if(element.style.display == 'block')
element.style.display = 'none';
else
element.style.display = 'block';
}
</script>
</body>
</html>