step2_NG.sh

#!/bin/bash
echo parameters_fl33.par > fl33.txt
script_dir=../rapid-earthquake-dynamics/
job1_id=$(sbatch ${script_dir}/scripts/job_NG_test.sh fl33.txt| awk '{print $NF}')
# Function to wait for a job to finish
wait_for_job() {
    local job_id=$1
    while :; do
        # Check if the job is still running or pending
        job_status=$(squeue --job=$job_id --noheader)
        if [[ -z "$job_status" ]]; then
            echo "Job $job_id has finished."
            break
        fi
        echo "Waiting for job $job_id to finish..."
        sleep 10
    done
}
wait_for_job $job1_id

job2_id=$(sbatch ${script_dir}/scripts/job_NG_create_parameters.sh | awk '{print $NF}')

job3_id=$(sbatch --dependency=afterok:$job2_id ${script_dir}/scripts/aggregated_jobs_NG.sh part_1.txt | awk '{print $NF}')
job4_id=$(sbatch --dependency=afterok:$job3_id ${script_dir}/scripts/compact_output_and_generate_PS_NG.sh | awk '{print $NF}')
job5_id=$(sbatch --dependency=afterok:$job4_id ${script_dir}/scripts/generate_syn.sh | awk '{print $NF}')