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Last nucleotide of sequence not being annotated #36

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DanielOlson opened this issue Jun 1, 2023 · 0 comments

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DanielOlson commented Jun 1, 2023

In sequences like:

DF0000002 avg_kimura=4.26 [aluy]
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGA
TCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAA
AAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGG
CTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGC
CACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAA

The last nucleotide is not annotated. It seems to be a combination of problems in CalculateTraceback() and GetNextRepeat().

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