v0.12.0

Turing v0.12.0

Diff since v0.11.0

Closed issues:

• Eorror:Precompiling Turing (#1088)
• Build failing. "AbstractChains not defined" (#1121)
• Make it easier to choose resampling method and threshold when using SMC() (#1226)
• Turing compilation fails (#1229)
• Data leakage in Bayesian logistic regression example (#1235)
• AD error with Bijectors 0.7 (#1256)

Merged pull requests:

• Update Turing to AbstractMCMC 1.0, AdvancedMH 0.5, and DynamicPPL 0.6 (#1224) (@devmotion)
• Add constructors and documentation for SMC (#1228) (@devmotion)
• Update variational_inference.md (#1234) (@cmerkatas)
• Use propagate! instead of Libtask.consume (#1237) (@devmotion)
• Added kwargs to deafult HMC constructor (#1238) (@torfjelde)
• Simplify ParticleContainer and add better tests for propagate! (#1242) (@devmotion)
• Allow sampling from the prior (#1243) (@devmotion)
• Remove sidebar for news/teams (#1246) (@cpfiffer)
• Make Turing compatible with Libtask 0.4 (#1248) (@devmotion)
• Make Turing compatible with DynamicPPL 0.7.1 (#1249) (@devmotion)
• Update history (#1251) (@mohamed82008)
• CompatHelper: bump compat for "Bijectors" to "0.7" (#1252) (@github-actions[bot])
• CompatHelper: bump compat for "DistributionsAD" to "0.5" (#1254) (@github-actions[bot])
• Some more changes (#1255) (@devmotion)
• Remove unused method (#1257) (@devmotion)
• Fix HMC initialization and allow AD in SampleFromPrior (#1258) (@mohamed82008)
• Run single- and multithreaded tests on Travis (#1259) (@devmotion)
• Also test on Julia 1.0 (#1262) (@devmotion)
• Clean CI setup (#1263) (@devmotion)
• HMC initialization fix - again (#1264) (@mohamed82008)
• Added contact info for Arthur (#1265) (@luiarthur)
• Fix log evidence computation (#1266) (@devmotion)
• Update gsoc_members.yml (#1267) (@SaranjeetKaur)
• Update gsoc_members.yml (#1268) (@SaranjeetKaur)
• More changes (#1269) (@devmotion)

v0.11.0

Turing v0.11.0

Diff since v0.10.1

Closed issues:

• Dynamic models seem to break (#1095)
• filldist and arraydist is not exported (#1154)
• Turing build error: could not import MCMCChains.AbstractChains into Turing (#1195)
• @. $ does not work inside @model (#1196)
• CI tests fail on Julia 1.4 + master (#1199)
• Question: example Sampler Visualization fails on VarInfo (#1205)
• StackOverflowError raised by the pdf of BinomialLogit (#1210)
• unable to precompile turing in juliapro (#1211)
• Add an explicit definition of the logit-parameterised Bernoulli distribution to Turing's distributions (#1213)
• Normal: the condition σ >= zero(σ) is not satisfied for well-specified model (#1215)
• Testing error (#1216)
• MethodError: no method matching Preconditioner (#1219)
• MethodError for AxisArrays.AxisArray for creating chains (#1220)

Merged pull requests:

• Improve particle samplers warning message (#900) (@yebai)
• Add multinomial logistic regression tutorial from TuringTutorials (#1181) (@DilumAluthge)
• Remove unused dependencies and imports (#1182) (@devmotion)
• CompatHelper: bump compat for "StatsBase" to "0.33" (#1185) (@github-actions[bot])
• Use default keyword arguments when sampling from Sampler (#1187) (@devmotion)
• Fixed links and stuff for VI docs (#1188) (@torfjelde)
• Run Github actions only once per day (#1189) (@devmotion)
• Update CI (#1190) (@devmotion)
• Fixing some of the headings in VI doc (#1192) (@torfjelde)
• Fix the link for Kai's photo (#1193) (@xukai92)
• Docs: Remove duplicate TOC entry for multinomial logistic regression tutorial (#1194) (@DilumAluthge)
• Fix crashes in CI tests (#1202) (@devmotion)
• Update members.yml (#1204) (@mileslucas)
• Update tagline (#1206) (@cpfiffer)
• Fix ReverseDiff caching and enable cache emptying (#1208) (@mohamed82008)
• Update sampler viz (#1209) (@cpfiffer)
• Closes #1210 added working pdf for BinomialLogit and VecBinomialLogit… (#1212) (@HarrisonWilde)
• Closes #1213 added logpdf for BernoulliLogit (#1214) (@HarrisonWilde)
• Fix HMC in Gibbs issue with dynamic models (#1217) (@mohamed82008)
• Update AHMC (#1218) (@xukai92)

v0.10.1

Turing v0.10.1

Diff since v0.10.0

Closed issues:

• Is von Mises distribution broken? (#1086)

Merged pull requests:

• Added document on variational inference (#1178) (@torfjelde)
• Add concretize before generating Chains (#1180) (@cpfiffer)

v0.10.0

Turing v0.10.0

Diff since v0.9.2

v0.9.2

Turing v0.9.2

Diff since v0.9.1

v0.9.1

Turing v0.9.1

Diff since v0.9.0

Closed issues:

• Juno Progress Metres (#799)
• Build an offical docker for Turing (#1113)
• strange sort of parameter names and values in calling describe with 'sections' (#1132)
• Failure working with MH sampler and MvNormal (#1133)
• Question: Use of the term multivariate regression in linear regression tutorial (#1143)
• Tidy up benchmarking scripts (#1144)
• Question: WARNING: could not import MCMCChains.AbstractChains into Turing ERROR: LoadError: LoadError: UndefVarError: AbstractChains not defined (#1150)
• Libtask error: setindex! not defined for TArray{Float64,1} (#1155)
• Missing method invlink in Bijectors 0.6 (#1158)
• Add compiler doc to navigation (#1159)
• side navigation bar not working on team page - https://turing.ml/dev/team/ (#1161)
• Broken link on https://turing.ml/dev/docs/using-turing/dynamichmc (#1171)

Merged pull requests:

• Zygote AD backend (#783) (@mohamed82008)
• Dockerfile for the Turing (latest, 0.8.3) (#1120) (@KDr2)
• Fix links to websites (#1130) (@devmotion)
• Use concrete types for fields of ADVI (#1131) (@devmotion)
• Use ProgressLogging instead of ProgressMeter (#1134) (@devmotion)
• Fix MH indexing bug (#1135) (@cpfiffer)
• Update dockerfile for new release (#1138) (@KDr2)
• Use Nanosoldier.jl to run benchmarks (#1142) (@KDr2)
• Use EllipticalSliceSampling (#1145) (@devmotion)
• Tidy up benchmark files (#1146) (@KDr2)
• Update my info on website (#1147) (@mohamed82008)
• Provide default progress loggers (#1149) (@devmotion)
• Move default model evaluation code to DynamicPPL (#1151) (@phipsgabler)
• Update members.yml (#1152) (@phipsgabler)
• CompatHelper: bump compat for "Bijectors" to "0.6" (#1153) (@github-actions[bot])
• Disable progress logs in tests (#1156) (@devmotion)
• Add compiler doc to website (#1160) (@cpfiffer)
• Move doc files to src/for-developers (#1162) (@cpfiffer)
• Fixed LinkedIn links (#1163) (@cpfiffer)
• Save transitions of samplers in Gibbs sampling (#1166) (@devmotion)
• Fix MH sampler for arrays of distributions (#1167) (@devmotion)
• FIX: bijector currently returns inverse of what it claims (#1168) (@torfjelde)
• Do not store transitions in Gibbs sampler (#1169) (@devmotion)
• ReverseDiff support (#1170) (@mohamed82008)
• Correct Gibbs link (#1174) (@cpfiffer)
• Update HISTORY.md (#1177) (@cpfiffer)

v0.9.0

Turing v0.9.0

Diff since v0.8.3

Closed issues:

• ERROR: LoadError: getϵ(adaptor::AdvancedHMC.Adaptation.NoAdaptation) is not implemented. (#1071)
• latex code / math broken on docs website (#1079)
• defining infinite mixture of dirichlets (#1080)
• Tutorial error (#1082)
• Dead link to compositional sampler paper (#1094)
• Code cells showing errors were thrown in linear regression example (#1096)
• DynamicHMC errors on 1.3 (#1098)
• Turing LoadError (#1122)
• LinearRegression Example Performance suggestion (#1123)

Merged pull requests:

• VI & ADVI improvements (#902) (@torfjelde)
• Run CI tests on Julia 1.3 (#1067) (@devmotion)
• CompatHelper: bump compat for "SpecialFunctions" to "0.10" (#1072) (@github-actions[bot])
• Use AdvancedMH (#1083) (@cpfiffer)
• Add method for pdf(::OrderedLogistic, x) (#1089) (@baggepinnen)
• More compatible and clearer baseurl inquiry (#1092) (@KDr2)
• fixes and improvements on CRP implementations (#1093) (@trappmartin)
• Install TagBot as a GitHub Action (#1097) (@JuliaTagBot)
• Fix errors with DynamicHMC (#1099) (@devmotion)
• Run benchmarks via github action (#1100) (@KDr2)
• Update guide.md (#1103) (@yebai)
• Remove state-saving by default (#1105) (@cpfiffer)
• Add GSoC blog post (#1106) (@cpfiffer)
• Update to new AbstractMCMC API (#1116) (@devmotion)
• Use reset_num_produce! (#1117) (@devmotion)
• Reduce benchmark related comment reply (#1119) (@KDr2)
• Add team page to the website (#1124) (@cpfiffer)
• Add static distributions idea to GSoC ideas (#1125) (@mohamed82008)
• Remove TrackedArray implementation and update DistributionsAD (#1128) (@devmotion)

v0.8.3

v0.8.3 (2020-01-19)

Diff since v0.8.2

Closed issues:

• beta (#1078)
• Anyone can help me? " TypeError: descriptor 'bind' of 'kivy._event.EventDispatcher' object needs an argument" (#1077)

Merged pull requests:

• Fix TuringLang/DynamicPPL.jl#27 (#1076) (devmotion)
• CompatHelper: bump compat for "DistributionsAD" to "0.2" (#1074) (github-actions[bot])
• Fix typo in docs build script (#1073) (cpfiffer)
• CompatHelper: bump compat for "AbstractMCMC" to "0.2" (#1069) (github-actions[bot])
• Hotfix for adaptation bug (#1063) (cpfiffer)

v0.8.2

v0.8.2 (2020-01-15)

Diff since v0.8.1

Closed issues:

• Turing Release (#1015)

Merged pull requests:

• Update pm_next (#1070) (xukai92)
• Attempt to fix broken versioning on docs site (#1065) (cpfiffer)
• added NUTS test (#1062) (trappmartin)
• CompatHelper: bump compat for "Distributions" to "0.22" (#1060) (github-actions[bot])
• Move benchmarking from TravisCI to Github Actions (#1059) (yebai)
• Simplify random processes (#1046) (devmotion)
• Make _params_to_array faster (#1043) (mohamed82008)

v0.8.1

v0.8.1 (2020-01-05)

Diff since v0.8.0

Merged pull requests:

• Increment to Turing 0.8.1 (#1057) (cpfiffer)
• Relax constraints for Requires (#1056) (itsdfish)
• CompatHelper: bump compat for "Bijectors" to "0.5" (#1052) (github-actions[bot])
• Switch to DynamicPPL (#1042) (mohamed82008)