FASTA-36.3.8d_install

#!/usr/bin/env bash

###############################################
# Installing FASTA using GCC 
#
# v36.3.8d
#
# by Brian Alston, Aug 2016
#
# Using Ian's require function to load modules
#
# Will need modules: see list of modules below.

VERSION=${VERSION:-36.3.8d}
VERSION_DATE=${VERSION_DATE:-13Apr16}
INSTALL_PREFIX=${INSTALL_PREFIX:-/shared/ucl/apps/FASTA/v${VERSION}}
MD5=${MD5:-5cf9000282c67fda5301ac6ef65b0366}
SRC_ARCHIVE=${SRC_ARCHIVE:- https://github.com/wrpearson/fasta36/archive/v${VERSION}_${VERSION_DATE}.tar.gz}

export PATH=$INSTALL_PREFIX/bin:$PATH

dirname=$(dirname $0 2>/dev/null || pwd)
INCLUDES_DIR=${INCLUDES_DIR:-${dirname}/includes}
source ${INCLUDES_DIR}/module_maker_inc.sh
source ${INCLUDES_DIR}/require_inc.sh

require gcc-libs/4.9.2
require compilers/gnu/4.9.2
temp_dir=`mktemp -d -p /dev/shm`
# temp_dir='/home/ccspapp/Software/cancerit'
echo "Building in $temp_dir ..."
cd $temp_dir
module list
read -p "Press [Enter] key to start ..."

cd $temp_dir

wget $SRC_ARCHIVE
ARCHIVE=`basename $SRC_ARCHIVE`

CHECKSUM=`md5sum $ARCHIVE | awk '{print $1}'`

if [[ "$MD5" == "$CHECKSUM" ]]
then
    tar xvzf $ARCHIVE
    cd fasta36-${VERSION}_${VERSION_DATE}/src
    make -f ../make/Makefile.linux_sse2 all 2>&1 | tee make_all_log
    cd ../bin
    mkdir -p ${INSTALL_PREFIX}/bin
    cp * ${INSTALL_PREFIX}/bin
    cd ../doc
    mkdir -p ${INSTALL_PREFIX}/man/man1
    cp *.1 ${INSTALL_PREFIX}/man/man1/
    mkdir -p ${INSTALL_PREFIX}/doc
    cp fasta_guide.pdf ${INSTALL_PREFIX}/doc/
else
   echo "***** Hash mismatch,"
   echo "	Expected: $MD5"
   echo "	Got:      $CHECKSUM"
fi