Fasta Absolute path bug

[galeoni]

Hi,

First of all, thanks for having developed GenoFlu!
I think I found a bug. When using abs path to fasta as input (i.e. genofly.py -f /AbsPath/Fasta), the tool retrieves the following error:

Traceback (most recent call last): File "/PathToGenoflu/bin/genoflu.py", line 342, in <module> genoflu = GenoFLU(FASTA=FASTA_abs_path, FASTA_dir=FASTA_dir, cross_reference=cross_reference, sample_name=args.sample_name, debug=args.debug) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "PathToGenoflu/bin/genoflu.py", line 135, in __init__ with open(FASTA_name, 'r') as f: ^^^^^^^^^^^^^^^^^^^^^

I fixed the issue by replacing the FASTA_name variable with the FASTA_abs_path variable.
Bests

Gabriele