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Enable ability to change threshold #5

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sage-wright opened this issue Jul 16, 2024 · 1 comment

sage-wright commented Jul 16, 2024

In line 235, the threshold to call genotype is hard-coded to 98%. Could you add an input variable that can customize this?

GenoFLU/bin/genoflu.py

Line 235 in f08f571

    
           if float(blast_genotyping_hpia[gene]['pident']) >= 98.0: # update excel print value if threshold changed

Contributor

stuber commented Jul 17, 2024

Will add this to the next update.

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